| APIS family ID | APIS178 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | SOS response | |||||||||||||
| CLAN ID | CLAN060 | |||||||||||||
| Seed protein property |
|
|||||||||||||
| Phage property |
|
|||||||||||||
| PMID/References | PMID:35443160 | |||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | PF03374.19,PF08346.17 | |||||||||||||
| Phrog | phrog_5817,phrog_14211,phrog_6904,phrog_9438,phrog_31873,phrog_15968 | |||||||||||||
| Host taxa | d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Listeriaceae;g__Listeria;s__Listeria monocytogenes | |||||||||||||
| Gene Location | Start: ; End: ; Strand: | |||||||||||||
| Description | LMRG_02920 (AriS) encodes in prophage L. monocytogenes strain 10403S. It acts as a RecA inhibitor and inhibits the bacterial SOS response. | |||||||||||||
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| AF-Q32DW8-F1-model_v4 | 3 | 259 | 8 | 239 | 0.6766 | 0.6248 |
| AF-A0A0H3H3S8-F1-model_v4 | 10 | 259 | 9 | 255 | 0.5929 | 0.571 |
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| MGYP000006543901.pdb | 122 | 259 | 4 | 140 | 0.8864 | 0.6639 |
| MGYP003293390289.pdb | 122 | 257 | 1 | 138 | 0.8638 | 0.6605 |
| MGYP003428310186.pdb | 110 | 256 | 3 | 149 | 0.8399 | 0.6431 |
| MGYP000414150919.pdb | 121 | 258 | 8 | 144 | 0.8726 | 0.6422 |
| MGYP003438300144.pdb | 127 | 257 | 1 | 133 | 0.8683 | 0.6398 |
| MGYP002801889031.pdb | 122 | 257 | 5 | 142 | 0.8521 | 0.6397 |
| MGYP001626014308.pdb | 121 | 258 | 15 | 152 | 0.8783 | 0.6272 |
| MGYP003594941204.pdb | 122 | 256 | 17 | 150 | 0.8938 | 0.6146 |
| MGYP000137203345.pdb | 106 | 259 | 22 | 169 | 0.7974 | 0.607 |
| MGYP000988684542.pdb | 116 | 256 | 6 | 159 | 0.7834 | 0.6041 |
| Fam ID | Seed protein | Member count | Model | Alignment | APIS178 | WP_014601097.1 | 154 | HMM model | Member alignment |
|---|
