| APIS family ID | APIS180 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | SOS response | |||||||||||||
| CLAN ID | CLAN064 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | PMID:19818715 | |||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | PF06290.16 | |||||||||||||
| Phrog | phrog_32496 | |||||||||||||
| Host taxa | d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia; | |||||||||||||
| Gene Location | Start: ; End: ; Strand: | |||||||||||||
| Description | PsiB protein works as an SOS inhibitor that binds to RecA to inhibit its activities. | |||||||||||||
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| AF-A0A0H3H5X3-F1-model_v4 | 1 | 143 | 1 | 143 | 0.9878 | 0.9804 |
| AF-Q93GP4-F1-model_v4 | 1 | 143 | 2 | 144 | 0.9843 | 0.9724 |
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| MGYP000897064886.pdb | 1 | 143 | 1 | 144 | 0.856 | 0.8243 |
| MGYP000797141083.pdb | 1 | 143 | 32 | 174 | 0.8836 | 0.791 |
| MGYP001571186000.pdb | 1 | 144 | 4 | 152 | 0.7675 | 0.7304 |
| Fam ID | Seed protein | Member count | Model | Alignment | APIS180 | WP_010892539.1 | 4 | HMM model | Member alignment |
|---|
| Member | pident | evalue | bitscore | qcovs | phage | host | SourceDB | Pfam | Phrog |
|---|---|---|---|---|---|---|---|---|---|
| IMGVR_UViG_2609460178_000003|2609460178|2611808585 | 57.100 | 3.909E-46 | 159 | 0.993% | Klebsiella pneumoniae | IMGVR | PF06290 | phrog_32496 | |
| IMGVR_UViG_2695420787_000013|2695420787|2697476674 | 60.500 | 4.137E-50 | 171 | 0.993% | Klebsiella pneumoniae | IMGVR | PF06290 | phrog_32496 | |
| WP_010892539.1 | 100.000 | 1.941E-93 | 295 | 1.000% | Escherichia coli | Escherichia | NCBI | PF06290 | phrog_32496 |
| IMGVR_UViG_651053022_000007|651053022|651210974 | 96.000 | 1.291E-92 | 293 | 1.000% | Escherichia coli | IMGVR | PF06290 | phrog_32496 |