| APIS family ID | APIS185 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | CRISPR-Cas evasion by DNA repair | |||||||||||||
| CLAN ID | CLAN038 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | PMID:32556263 | |||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | PF09588.15 | |||||||||||||
| Phrog | ||||||||||||||
| Host taxa | d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio; | |||||||||||||
| Gene Location | Start: ; End: ; Strand: | |||||||||||||
| Description | CRISPR–Cas evasion by repairing double-strand DNA breaks via recombination between short sequence repeats | |||||||||||||
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| AF-Q32GM8-F1-model_v4 | 1 | 192 | 1 | 215 | 0.7536 | 0.6075 |
| AF-K7K9X8-F1-model_v4 | 6 | 196 | 20 | 232 | 0.7342 | 0.5514 |
| AF-I1KRY7-F1-model_v4 | 1 | 197 | 65 | 283 | 0.7672 | 0.5307 |
| AF-Q5XVK9-F1-model_v4 | 6 | 197 | 57 | 272 | 0.7176 | 0.5136 |
| AF-Q8GW93-F1-model_v4 | 1 | 197 | 41 | 323 | 0.604 | 0.4992 |
| AF-A0A1D6E7X0-F1-model_v4 | 1 | 197 | 142 | 361 | 0.764 | 0.4781 |
| AF-C0HGN0-F1-model_v4 | 2 | 197 | 144 | 359 | 0.7697 | 0.4752 |
| AF-A0A0N7KPH9-F1-model_v4 | 2 | 197 | 158 | 373 | 0.7678 | 0.4675 |
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| MGYP001235061198.pdb | 1 | 196 | 1 | 196 | 0.9715 | 0.7664 |
| MGYP000212734771.pdb | 6 | 191 | 1 | 186 | 0.9773 | 0.7546 |
| MGYP001778824595.pdb | 6 | 201 | 1 | 199 | 0.9577 | 0.7509 |
| MGYP001828871838.pdb | 1 | 200 | 1 | 200 | 0.9441 | 0.7501 |
| MGYP000097069716.pdb | 1 | 205 | 1 | 198 | 0.94 | 0.7431 |
| MGYP000334798324.pdb | 1 | 176 | 1 | 176 | 0.9756 | 0.7411 |
| MGYP001820661656.pdb | 1 | 201 | 1 | 206 | 0.9365 | 0.7276 |
| MGYP000060678368.pdb | 1 | 196 | 1 | 200 | 0.9166 | 0.7274 |
| MGYP001591426411.pdb | 3 | 195 | 1 | 190 | 0.9305 | 0.7243 |
| MGYP001275816148.pdb | 1 | 196 | 2 | 192 | 0.9194 | 0.7223 |
| Fam ID | Seed protein | Member count | Model | Alignment | APIS185 | YP_008997729.1 | 10 | HMM model | Member alignment |
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