| APIS family ID | APIS195 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | toxin-antitoxin (TA) | |||||||||||||
| CLAN ID | CLAN065 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | PMID:39026772 | |||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | PF08010.16 | |||||||||||||
| Phrog | ||||||||||||||
| Host taxa | d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia; | |||||||||||||
| Gene Location | Start: ; End: ; Strand: | |||||||||||||
| Description | Anti-DarT factor NADAR (AdfN), removes ADP-ribose modifications from phage DNA during infection thereby enabling replication in DarTG1-containing bacteria. AdfN, like DarG1, is in the NADAR superfamily of ADP-ribosylglycohydrolases. | |||||||||||||
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
| MSELEIRSNF RWPSCALSNF AQWPFVMDGI QFGGLEGFLQ GCKVKNVEQQ RRIFGLSGLA | 60 |
| AQQAGRSYAR AQDRGTLFWL GVPFSRYSPA WKELYTNAYF EAAIQNKGFR DALQASKGKV | 120 |
| LKHSMASGLT KDDTILTEAE FIDVLNLLRD SL | 152 |
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| MGYP000187068478.pdb | 1 | 152 | 1 | 152 | 0.9745 | 0.9674 |
| MGYP001571694117.pdb | 1 | 151 | 2 | 152 | 0.9433 | 0.9313 |
| MGYP000012094249.pdb | 4 | 152 | 1 | 146 | 0.9514 | 0.9252 |
| MGYP003621366742.pdb | 4 | 152 | 1 | 146 | 0.952 | 0.925 |
| MGYP002508153472.pdb | 4 | 149 | 1 | 144 | 0.9575 | 0.9218 |
| MGYP000669273966.pdb | 3 | 152 | 1 | 147 | 0.9483 | 0.9195 |
| MGYP003487091401.pdb | 4 | 152 | 1 | 149 | 0.9406 | 0.9192 |
| MGYP002558511419.pdb | 1 | 152 | 2 | 151 | 0.9333 | 0.916 |
| MGYP003308194965.pdb | 2 | 152 | 1 | 148 | 0.9433 | 0.9156 |
| MGYP000480180796.pdb | 3 | 152 | 1 | 150 | 0.9369 | 0.9154 |
| Fam ID | Seed protein | Member count | Model | Alignment |
|---|---|---|---|---|
| APIS195 | AdfN | 192 | HMM model | Member alignment |
