Because CGCFinder predicted no CGC for this PUL, the gene cluster depicted below contains dbCAN2 and CGC signature predictions for all genes in the PUL, instead of a predicted CGC.


PUL ID

PUL0002

PubMed

8606172, J Bacteriol. 1996 Apr;178(7):1971-9. doi: 10.1128/jb.178.7.1971-1979.1996.

Characterization method

enzyme activity assay,Northern Blot

Genomic accession number

D83026.1

Nucelotide position range

10377-12234

Substrate

lichenan

Loci

licTS

Species

Bacillus subtilis/1423

Degradation or Biosynthesis

degradation

Gene Name

Locus Tag

Protein ID

Gene Position

GenBank Contig Range

EC Number

licT - BAA11696.1 0 - 834 (+) D83026.1:10377-11211 -
licS - BAA11697.1 1129 - 1858 (+) D83026.1:11506-12235 -

Cluster number

0

Gene name

Gene position

Gene type

Found by CGCFinder?

- 1 - 834 (+) CDS No
- 1130 - 1858 (+) CAZyme: GH16 No

PUL ID

PUL0002

PubMed

8606172, J Bacteriol. 1996 Apr;178(7):1971-9. doi: 10.1128/jb.178.7.1971-1979.1996.

Title

LicT, a Bacillus subtilis transcriptional antiterminator protein of the BglG family.

Author

Schnetz K, Stulke J, Gertz S, Kruger S, Krieg M, Hecker M, Rak B

Abstract

Gene licS of Bacillus subtilis encodes an excreted Beta-1,3-1,4-endoglucanase necessary for lichenan utilization. Upstream of licS we found a gene (termed licT) together with its promoter which encodes a transcriptional antiterminator of the BglG family. Genes licT and licS are separated by a palindromic sequence (lic-t) reminiscent of transcriptional terminators recognized by the antiterminator proteins of the BglG family. The LicT protein can prevent termination at terminator lic-t and also at terminator t2 of the Escherichia coli bgl operon and BglG prevents termination at lic-t. The role of LicT in licS regulation by preventing termination at its terminator lic-t appears to be limited since expression of licS is inducible only two- to threefold. This limited regulation is mainly due to a high basal level of licS expression which can in part be attributed to the presence of a second promoter preceding licS and located downstream of lic-t. However, disruption of gene licT leads not only to loss of inducibility of licS but also to loss of growth on lichenan or on its degradation products, indicating its stringent role in beta-glucan utilization.