Statistics

General Statistics

The current release of dbCAN-PUL is based on PubMed searches as of Jan 8 2020.
Currently the dbCAN-PUL database contains:
Total number of PULs: 612 Number of differnet CAZyme families represented in dbCAN-PUL: 184
Number of different represented substrates: 126 Number of genera represented: 87
Number of PUL characterization methods: 74 Number of PULs with CGCs predicted by CGCFinder: 524
Number of CAZyme proteins across all PULs: 2,133 Number of proteins contained in CGCs across all PULs: 7,838

Browse dbCAN-PUL by substrate:

Distribution of PUL according to substratesophorose0.004laminaribiose0.012kestose0.02emulsan0.028oligogalacturonide0.036raffinose-oligosaccharide0.044isomaltotriose0.052arabinofuranose0.06beta-galactoside0.068chondroitin sulfate0.076arabinofuranooligosaccharide0.084lacto-n-triose0.092xanthan0.1aldouronate0.108maltooligosaccharide0.116melezitose0.124gentiobiose0.132panose0.14heparosan0.148fucosyllactose0.156sorbitol0.164sialoglycoconjugate0.172d-galactosamine0.18unsaturated hyaluronate disaccharide0.188chondroitin disaccharide0.196cyclomaltodextrin0.204acetylated glucuronoxylan0.212polysialic acid0.22mannooligosaccharide0.228acarbose0.236cellotriose0.244xylotriose0.252xylodextrin0.26N-acetyl-D-glucosamine0.268galacturonic acid0.276 rhamnose0.284pullulan0.292chondrotin sulfate0.3chitooligosaccharide0.308cellooligosaccharide0.316alpha-mannoside0.324cellodextrin0.332arabino-xylooligosaccharide0.34ribose0.348trehalose0.356stachyose0.364alpha-galactoside0.372ulvan0.38isomaltose0.388mannose0.396sialic acid0.404lipopolysaccharide0.412unknown polysaccharide0.42homogalacturonan0.428glucan0.436polygalacturonic acid0.444dextran0.452glucosamine0.46methylglucuronoarabinoxylan0.468galactomannooligosaccharide0.476galactose0.484glycogen0.492chitobiose0.54-methylumbelliferyl 6-azido-6-deoxy-beta-D-galactoside0.508fucose0.516maltotriose0.524xylobiose0.532N-acetyl-D-galactosamine0.54outer core capsule polysaccharide0.548xylose0.556arabinose0.564fructooligosaccharide0.572beta-galactooligosaccharide0.58xylooligosaccharide0.588maltodextrin0.596human milk oligosaccharide0.604inulin0.612fructan0.62beta-glucoside0.628arabinogalactan0.636porphyran0.644alpha-glucan0.652agar0.66levan0.668beta-mannan0.676mannan0.684lignocellulose0.692hemicellulose0.7carboxymethylcellulose0.708maltose0.716glycosaminoglycan0.724arabinoxylan0.732galactooligosaccharide0.74N-acetylglucosamine0.748plant polysaccharide0.756glucose0.764laminarin0.772alpha-mannan0.78raffinose0.788xyloglucan0.796carrageenan0.804rhamnogalacturonan0.812galactan0.82melibiose0.828sucrose0.836exopolysaccharide0.844starch0.852lichenan0.86mucin0.868host glycan0.876cellulose0.884chitin0.892arabinan0.9galactomannan0.908glucomannan0.916lactose0.924alginate0.932cellobiose0.94beta-glucan0.948pectin0.956O-glycan0.964N-glycan0.972O-antigen0.98xylan0.988capsule polysaccharide0.9960102030405060Get_Substrate_entries?substrate=sophorosesophorose112.1433002481389581166.4461538461537sophoroseGet_Substrate_entries?substrate=laminaribioselaminaribiose112.1433002481389581157.2615384615385laminaribioseGet_Substrate_entries?substrate=kestosekestose112.1433002481389581148.076923076923kestoseGet_Substrate_entries?substrate=emulsanemulsan112.1433002481389581138.8923076923077emulsanGet_Substrate_entries?substrate=oligogalacturonideoligogalacturonide112.1433002481389581129.7076923076922oligogalacturonideGet_Substrate_entries?substrate=raffinose-oligosaccharideraffinose-oligosaccharide112.1433002481389581120.5230769230768raffinose-oligosaccharideGet_Substrate_entries?substrate=isomaltotrioseisomaltotriose112.1433002481389581111.3384615384616isomaltotrioseGet_Substrate_entries?substrate=arabinofuranosearabinofuranose112.1433002481389581102.1538461538462arabinofuranoseGet_Substrate_entries?substrate=beta-galactosidebeta-galactoside112.1433002481389581092.9692307692308beta-galactosideGet_Substrate_entries?substrate=chondroitin sulfatechondroitin sulfate112.1433002481389581083.7846153846153chondroitin sulfateGet_Substrate_entries?substrate=arabinofuranooligosaccharidearabinofuranooligosaccharide112.1433002481389581074.6arabinofuranooligosaccharideGet_Substrate_entries?substrate=lacto-n-trioselacto-n-triose112.1433002481389581065.4153846153845lacto-n-trioseGet_Substrate_entries?substrate=xanthanxanthan112.1433002481389581056.2307692307693xanthanGet_Substrate_entries?substrate=aldouronatealdouronate112.1433002481389581047.0461538461539aldouronateGet_Substrate_entries?substrate=maltooligosaccharidemaltooligosaccharide112.1433002481389581037.8615384615384maltooligosaccharideGet_Substrate_entries?substrate=melezitosemelezitose112.1433002481389581028.676923076923melezitoseGet_Substrate_entries?substrate=gentiobiosegentiobiose112.1433002481389581019.4923076923078gentiobioseGet_Substrate_entries?substrate=panosepanose112.1433002481389581010.3076923076923panoseGet_Substrate_entries?substrate=heparosanheparosan112.1433002481389581001.123076923077heparosanGet_Substrate_entries?substrate=fucosyllactosefucosyllactose112.143300248138958991.9384615384615fucosyllactoseGet_Substrate_entries?substrate=sorbitolsorbitol112.143300248138958982.7538461538461sorbitolGet_Substrate_entries?substrate=sialoglycoconjugatesialoglycoconjugate112.143300248138958973.5692307692308sialoglycoconjugateGet_Substrate_entries?substrate=d-galactosamined-galactosamine112.143300248138958964.3846153846154d-galactosamineGet_Substrate_entries?substrate=unsaturated hyaluronate disaccharideunsaturated hyaluronate disaccharide112.143300248138958955.2unsaturated hyaluronate disaccharideGet_Substrate_entries?substrate=chondroitin disaccharidechondroitin disaccharide112.143300248138958946.0153846153846chondroitin disaccharideGet_Substrate_entries?substrate=cyclomaltodextrincyclomaltodextrin112.143300248138958936.8307692307692cyclomaltodextrinGet_Substrate_entries?substrate=acetylated glucuronoxylanacetylated glucuronoxylan112.143300248138958927.6461538461539acetylated glucuronoxylanGet_Substrate_entries?substrate=polysialic acidpolysialic acid112.143300248138958918.4615384615385polysialic acidGet_Substrate_entries?substrate=mannooligosaccharidemannooligosaccharide112.143300248138958909.276923076923mannooligosaccharideGet_Substrate_entries?substrate=acarboseacarbose112.143300248138958900.0923076923077acarboseGet_Substrate_entries?substrate=cellotriosecellotriose112.143300248138958890.9076923076923cellotrioseGet_Substrate_entries?substrate=xylotriosexylotriose112.143300248138958881.7230769230769xylotrioseGet_Substrate_entries?substrate=xylodextrinxylodextrin112.143300248138958872.5384615384614xylodextrinGet_Substrate_entries?substrate=N-acetyl-D-glucosamineN-acetyl-D-glucosamine112.143300248138958863.353846153846N-acetyl-D-glucosamineGet_Substrate_entries?substrate=galacturonic acidgalacturonic acid112.143300248138958854.1692307692308galacturonic acidGet_Substrate_entries?substrate= rhamnose rhamnose112.143300248138958844.9846153846154 rhamnoseGet_Substrate_entries?substrate=pullulanpullulan112.143300248138958835.8pullulanGet_Substrate_entries?substrate=chondrotin sulfatechondrotin sulfate112.143300248138958826.6153846153845chondrotin sulfateGet_Substrate_entries?substrate=chitooligosaccharidechitooligosaccharide112.143300248138958817.4307692307692chitooligosaccharideGet_Substrate_entries?substrate=cellooligosaccharidecellooligosaccharide112.143300248138958808.2461538461539cellooligosaccharideGet_Substrate_entries?substrate=alpha-mannosidealpha-mannoside112.143300248138958799.0615384615385alpha-mannosideGet_Substrate_entries?substrate=cellodextrincellodextrin112.143300248138958789.876923076923cellodextrinGet_Substrate_entries?substrate=arabino-xylooligosaccharidearabino-xylooligosaccharide112.143300248138958780.6923076923076arabino-xylooligosaccharideGet_Substrate_entries?substrate=riboseribose215.632754342431761771.5076923076923riboseGet_Substrate_entries?substrate=trehalosetrehalose215.632754342431761762.3230769230769trehaloseGet_Substrate_entries?substrate=stachyosestachyose215.632754342431761753.1384615384616stachyoseGet_Substrate_entries?substrate=alpha-galactosidealpha-galactoside215.632754342431761743.9538461538461alpha-galactosideGet_Substrate_entries?substrate=ulvanulvan215.632754342431761734.7692307692307ulvanGet_Substrate_entries?substrate=isomaltoseisomaltose215.632754342431761725.5846153846153isomaltoseGet_Substrate_entries?substrate=mannosemannose215.632754342431761716.3999999999999mannoseGet_Substrate_entries?substrate=sialic acidsialic acid215.632754342431761707.2153846153846sialic acidGet_Substrate_entries?substrate=lipopolysaccharidelipopolysaccharide215.632754342431761698.0307692307692lipopolysaccharideGet_Substrate_entries?substrate=unknown polysaccharideunknown polysaccharide215.632754342431761688.8461538461538unknown polysaccharideGet_Substrate_entries?substrate=homogalacturonanhomogalacturonan215.632754342431761679.6615384615385homogalacturonanGet_Substrate_entries?substrate=glucanglucan215.632754342431761670.4769230769231glucanGet_Substrate_entries?substrate=polygalacturonic acidpolygalacturonic acid215.632754342431761661.2923076923076polygalacturonic acidGet_Substrate_entries?substrate=dextrandextran215.632754342431761652.1076923076923dextranGet_Substrate_entries?substrate=glucosamineglucosamine215.632754342431761642.9230769230769glucosamineGet_Substrate_entries?substrate=methylglucuronoarabinoxylanmethylglucuronoarabinoxylan215.632754342431761633.7384615384615methylglucuronoarabinoxylanGet_Substrate_entries?substrate=galactomannooligosaccharidegalactomannooligosaccharide215.632754342431761624.5538461538462galactomannooligosaccharideGet_Substrate_entries?substrate=galactosegalactose319.122208436724563615.3692307692307galactoseGet_Substrate_entries?substrate=glycogenglycogen319.122208436724563606.1846153846153glycogenGet_Substrate_entries?substrate=chitobiosechitobiose319.122208436724563597.0chitobioseGet_Substrate_entries?substrate=4-methylumbelliferyl 6-azido-6-deoxy-beta-D-galactoside4-methylumbelliferyl 6-azido-6-deoxy-beta-D-galactoside319.122208436724563587.81538461538464-methylumbelliferyl 6-azido-6-deoxy-beta-D-galactosideGet_Substrate_entries?substrate=fucosefucose319.122208436724563578.6307692307691fucoseGet_Substrate_entries?substrate=maltotriosemaltotriose319.122208436724563569.4461538461538maltotrioseGet_Substrate_entries?substrate=xylobiosexylobiose319.122208436724563560.2615384615384xylobioseGet_Substrate_entries?substrate=N-acetyl-D-galactosamineN-acetyl-D-galactosamine319.122208436724563551.0769230769231N-acetyl-D-galactosamineGet_Substrate_entries?substrate=outer core capsule polysaccharideouter core capsule polysaccharide422.61166253101737541.8923076923077outer core capsule polysaccharideGet_Substrate_entries?substrate=xylosexylose422.61166253101737532.7076923076922xyloseGet_Substrate_entries?substrate=arabinosearabinose422.61166253101737523.5230769230768arabinoseGet_Substrate_entries?substrate=fructooligosaccharidefructooligosaccharide422.61166253101737514.3384615384615fructooligosaccharideGet_Substrate_entries?substrate=beta-galactooligosaccharidebeta-galactooligosaccharide422.61166253101737505.1538461538462beta-galactooligosaccharideGet_Substrate_entries?substrate=xylooligosaccharidexylooligosaccharide422.61166253101737495.9692307692309xylooligosaccharideGet_Substrate_entries?substrate=maltodextrinmaltodextrin422.61166253101737486.78461538461545maltodextrinGet_Substrate_entries?substrate=human milk oligosaccharidehuman milk oligosaccharide422.61166253101737477.6human milk oligosaccharideGet_Substrate_entries?substrate=inulininulin422.61166253101737468.4153846153846inulinGet_Substrate_entries?substrate=fructanfructan526.101116625310173459.23076923076917fructanGet_Substrate_entries?substrate=beta-glucosidebeta-glucoside526.101116625310173450.04615384615386beta-glucosideGet_Substrate_entries?substrate=arabinogalactanarabinogalactan526.101116625310173440.86153846153843arabinogalactanGet_Substrate_entries?substrate=porphyranporphyran526.101116625310173431.676923076923porphyranGet_Substrate_entries?substrate=alpha-glucanalpha-glucan526.101116625310173422.4923076923076alpha-glucanGet_Substrate_entries?substrate=agaragar526.101116625310173413.30769230769226agarGet_Substrate_entries?substrate=levanlevan526.101116625310173404.12307692307695levanGet_Substrate_entries?substrate=beta-mannanbeta-mannan629.590570719602976394.9384615384615beta-mannanGet_Substrate_entries?substrate=mannanmannan629.590570719602976385.7538461538461mannanGet_Substrate_entries?substrate=lignocelluloselignocellulose629.590570719602976376.5692307692308lignocelluloseGet_Substrate_entries?substrate=hemicellulosehemicellulose629.590570719602976367.38461538461536hemicelluloseGet_Substrate_entries?substrate=carboxymethylcellulosecarboxymethylcellulose629.590570719602976358.20000000000005carboxymethylcelluloseGet_Substrate_entries?substrate=maltosemaltose733.080024813895776349.01538461538473maltoseGet_Substrate_entries?substrate=glycosaminoglycanglycosaminoglycan733.080024813895776339.8307692307693glycosaminoglycanGet_Substrate_entries?substrate=arabinoxylanarabinoxylan733.080024813895776330.6461538461539arabinoxylanGet_Substrate_entries?substrate=galactooligosaccharidegalactooligosaccharide733.080024813895776321.46153846153845galactooligosaccharideGet_Substrate_entries?substrate=N-acetylglucosamineN-acetylglucosamine733.080024813895776312.276923076923N-acetylglucosamineGet_Substrate_entries?substrate=plant polysaccharideplant polysaccharide733.080024813895776303.0923076923077plant polysaccharideGet_Substrate_entries?substrate=glucoseglucose836.569478908188586293.9076923076923glucoseGet_Substrate_entries?substrate=laminarinlaminarin836.569478908188586284.72307692307686laminarinGet_Substrate_entries?substrate=alpha-mannanalpha-mannan836.569478908188586275.53846153846143alpha-mannanGet_Substrate_entries?substrate=raffinoseraffinose940.05893300248138266.353846153846raffinoseGet_Substrate_entries?substrate=xyloglucanxyloglucan940.05893300248138257.1692307692308xyloglucanGet_Substrate_entries?substrate=carrageenancarrageenan940.05893300248138247.9846153846154carrageenanGet_Substrate_entries?substrate=rhamnogalacturonanrhamnogalacturonan940.05893300248138238.79999999999998rhamnogalacturonanGet_Substrate_entries?substrate=galactangalactan1043.54838709677419229.61538461538467galactanGet_Substrate_entries?substrate=melibiosemelibiose1043.54838709677419220.43076923076924melibioseGet_Substrate_entries?substrate=sucrosesucrose1147.03784119106699211.24615384615393sucroseGet_Substrate_entries?substrate=exopolysaccharideexopolysaccharide1147.03784119106699202.06153846153862exopolysaccharideGet_Substrate_entries?substrate=starchstarch1147.03784119106699192.87692307692308starchGet_Substrate_entries?substrate=lichenanlichenan1354.01674937965261183.69230769230776lichenanGet_Substrate_entries?substrate=mucinmucin1457.506203473945405174.50769230769222mucinGet_Substrate_entries?substrate=host glycanhost glycan1457.506203473945405165.32307692307702host glycanGet_Substrate_entries?substrate=cellulosecellulose1560.9956575682382156.13846153846137celluloseGet_Substrate_entries?substrate=chitinchitin1560.9956575682382146.95384615384617chitinGet_Substrate_entries?substrate=arabinanarabinan1560.9956575682382137.76923076923097arabinanGet_Substrate_entries?substrate=galactomannangalactomannan1560.9956575682382128.58461538461532galactomannanGet_Substrate_entries?substrate=glucomannanglucomannan1560.9956575682382119.4000000000001glucomannanGet_Substrate_entries?substrate=lactoselactose1767.97456575682382110.21538461538445lactoseGet_Substrate_entries?substrate=alginatealginate2181.93238213399503101.03076923076925alginateGet_Substrate_entries?substrate=cellobiosecellobiose2388.9112903225806491.84615384615383cellobioseGet_Substrate_entries?substrate=beta-glucanbeta-glucan28106.3585607940446682.66153846153863beta-glucanGet_Substrate_entries?substrate=pectinpectin28106.3585607940446673.4769230769232pectinGet_Substrate_entries?substrate=O-glycanO-glycan30113.3374689826302764.29230769230777O-glycanGet_Substrate_entries?substrate=N-glycanN-glycan34127.2952853598014855.10769230769236N-glycanGet_Substrate_entries?substrate=O-antigenO-antigen39144.742555831265545.923076923076934O-antigenGet_Substrate_entries?substrate=xylanxylan40148.232009925558336.73846153846151xylanGet_Substrate_entries?substrate=capsule polysaccharidecapsule polysaccharide62224.9999999999999727.5538461538463capsule polysaccharideDistribution of PUL according to substrate

Browse dbCAN-PUL by genus:

Distribution of PUL according to taxonomy rank (genus)Listeria0.005494505495Leuconostoc0.01648351648Streptobacillus0.02747252747Azotobacter0.03846153846[Ruminococcus]0.04945054945Spiroplasma0.06043956044Caulobacter0.07142857143Cellulophaga0.08241758242Maricaulis0.09340659341Stenotrophomonas0.1043956044Dysgonomonas0.1153846154Faecalibacterium0.1263736264gut0.1373626374Acidiphilium0.1483516484Agrobacterium0.1593406593Leeuwenhoekiella0.1703296703Franconibacter0.1813186813Saccharophagus0.1923076923termite0.2032967033Polaribacter0.2142857143Pectobacterium0.2252747253Tannerella0.2362637363Halorubrum0.2472527473Haloferax0.2582417582Providencia0.2692307692Gluconacetobacter0.2802197802Aliivibrio0.2912087912Leptotrichia0.3021978022Cupriavidus0.3131868132Coprothermobacter0.3241758242Ralstonia0.3351648352Sinorhizobium0.3461538462Clavibacter0.3571428571Actinoplanes0.3681318681Paraglaciecola0.3791208791Photobacterium0.3901098901Thermoanaerobacterium0.4010989011Parageobacillus0.4120879121Wenyingzhuangia0.4230769231Rhodothermus0.4340659341Winogradskyella0.4450549451Muricauda0.456043956Thermus0.467032967Klebsiella0.478021978feces0.489010989Thermococcus0.5Salegentibacter0.510989011Kribbella0.521978022Cellvibrio0.532967033Sphingomonas0.543956044Pseudomonas0.5549450549Staphylococcus0.5659340659Collimonas0.5769230769Salmonella0.5879120879Microbulbifer0.5989010989Colwellia0.6098901099[Eubacterium]0.6208791209Yersinia0.6318681319Capnocytophaga0.6428571429Caldanaerobius0.6538461538Nitrosospira0.6648351648Enterococcus0.6758241758Caldicellulosiruptor0.6868131868Thermotoga0.6978021978Paenibacillus0.7087912088Serratia0.7197802198Corynebacterium0.7307692308Streptomyces0.7417582418Roseburia0.7527472527Dickeya0.7637362637Lactococcus0.7747252747Gramella0.7857142857Vibrio0.7967032967Alteromonas0.8076923077Xanthomonas0.8186813187Clostridium0.8296703297Geobacillus0.8406593407Prevotella0.8516483516Pseudoalteromonas0.8626373626Chitinophaga0.8736263736Zobellia0.8846153846Ruminiclostridium0.8956043956Bacillus0.9065934066Flavobacterium0.9175824176Acinetobacter0.9285714286Lactobacillus0.9395604396Streptococcus0.9505494505uncultured0.9615384615Bifidobacterium0.9725274725Escherichia0.9835164835Bacteroides0.9945054945020406080100120140160Get_Organism_entries?organism=ListeriaListeria114.333476579286634833.0650887573963ListeriaGet_Organism_entries?organism=LeuconostocLeuconostoc114.333476579286634824.041420118343LeuconostocGet_Organism_entries?organism=StreptobacillusStreptobacillus114.333476579286634815.0177514792898StreptobacillusGet_Organism_entries?organism=AzotobacterAzotobacter114.333476579286634805.9940828402365AzotobacterGet_Organism_entries?organism=[Ruminococcus][Ruminococcus]114.333476579286634796.9704142011833[Ruminococcus]Get_Organism_entries?organism=SpiroplasmaSpiroplasma114.333476579286634787.94674556213SpiroplasmaGet_Organism_entries?organism=CaulobacterCaulobacter114.333476579286634778.9230769230768CaulobacterGet_Organism_entries?organism=CellulophagaCellulophaga114.333476579286634769.8994082840235CellulophagaGet_Organism_entries?organism=MaricaulisMaricaulis114.333476579286634760.8757396449703MaricaulisGet_Organism_entries?organism=StenotrophomonasStenotrophomonas114.333476579286634751.852071005917StenotrophomonasGet_Organism_entries?organism=DysgonomonasDysgonomonas114.333476579286634742.8284023668638DysgonomonasGet_Organism_entries?organism=FaecalibacteriumFaecalibacterium114.333476579286634733.8047337278105FaecalibacteriumGet_Organism_entries?organism=gutgut114.333476579286634724.7810650887573gutGet_Organism_entries?organism=AcidiphiliumAcidiphilium114.333476579286634715.7573964497041AcidiphiliumGet_Organism_entries?organism=AgrobacteriumAgrobacterium114.333476579286634706.7337278106507AgrobacteriumGet_Organism_entries?organism=LeeuwenhoekiellaLeeuwenhoekiella114.333476579286634697.7100591715975LeeuwenhoekiellaGet_Organism_entries?organism=FranconibacterFranconibacter114.333476579286634688.6863905325442FranconibacterGet_Organism_entries?organism=SaccharophagusSaccharophagus114.333476579286634679.6627218934909SaccharophagusGet_Organism_entries?organism=termitetermite114.333476579286634670.6390532544377termiteGet_Organism_entries?organism=PolaribacterPolaribacter114.333476579286634661.6153846153845PolaribacterGet_Organism_entries?organism=PectobacteriumPectobacterium114.333476579286634652.5917159763312PectobacteriumGet_Organism_entries?organism=TannerellaTannerella114.333476579286634643.5680473372779TannerellaGet_Organism_entries?organism=HalorubrumHalorubrum114.333476579286634634.5443786982247HalorubrumGet_Organism_entries?organism=HaloferaxHaloferax114.333476579286634625.5207100591715HaloferaxGet_Organism_entries?organism=ProvidenciaProvidencia114.333476579286634616.4970414201182ProvidenciaGet_Organism_entries?organism=GluconacetobacterGluconacetobacter114.333476579286634607.4733727810649GluconacetobacterGet_Organism_entries?organism=AliivibrioAliivibrio114.333476579286634598.4497041420117AliivibrioGet_Organism_entries?organism=LeptotrichiaLeptotrichia114.333476579286634589.4260355029585LeptotrichiaGet_Organism_entries?organism=CupriavidusCupriavidus114.333476579286634580.4023668639052CupriavidusGet_Organism_entries?organism=CoprothermobacterCoprothermobacter114.333476579286634571.3786982248519CoprothermobacterGet_Organism_entries?organism=RalstoniaRalstonia114.333476579286634562.3550295857988RalstoniaGet_Organism_entries?organism=SinorhizobiumSinorhizobium114.333476579286634553.3313609467455SinorhizobiumGet_Organism_entries?organism=ClavibacterClavibacter114.333476579286634544.3076923076922ClavibacterGet_Organism_entries?organism=ActinoplanesActinoplanes114.333476579286634535.2840236686388ActinoplanesGet_Organism_entries?organism=ParaglaciecolaParaglaciecola114.333476579286634526.2603550295856ParaglaciecolaGet_Organism_entries?organism=PhotobacteriumPhotobacterium114.333476579286634517.2366863905324PhotobacteriumGet_Organism_entries?organism=ThermoanaerobacteriumThermoanaerobacterium114.333476579286634508.21301775147924ThermoanaerobacteriumGet_Organism_entries?organism=ParageobacillusParageobacillus114.333476579286634499.18934911242604ParageobacillusGet_Organism_entries?organism=WenyingzhuangiaWenyingzhuangia114.333476579286634490.1656804733728WenyingzhuangiaGet_Organism_entries?organism=RhodothermusRhodothermus114.333476579286634481.1420118343196RhodothermusGet_Organism_entries?organism=WinogradskyellaWinogradskyella114.333476579286634472.1183431952663WinogradskyellaGet_Organism_entries?organism=MuricaudaMuricauda114.333476579286634463.094674556213MuricaudaGet_Organism_entries?organism=ThermusThermus216.09003008165019454.07100591715977ThermusGet_Organism_entries?organism=KlebsiellaKlebsiella216.09003008165019445.04733727810657KlebsiellaGet_Organism_entries?organism=fecesfeces216.09003008165019436.0236686390533fecesGet_Organism_entries?organism=ThermococcusThermococcus216.09003008165019427.0ThermococcusGet_Organism_entries?organism=SalegentibacterSalegentibacter216.09003008165019417.9763313609468SalegentibacterGet_Organism_entries?organism=KribbellaKribbella216.09003008165019408.9526627218935KribbellaGet_Organism_entries?organism=CellvibrioCellvibrio216.09003008165019399.92899408284023CellvibrioGet_Organism_entries?organism=SphingomonasSphingomonas216.09003008165019390.90532544378704SphingomonasGet_Organism_entries?organism=PseudomonasPseudomonas216.09003008165019381.8816568047337PseudomonasGet_Organism_entries?organism=StaphylococcusStaphylococcus216.09003008165019372.8579881656805StaphylococcusGet_Organism_entries?organism=CollimonasCollimonas216.09003008165019363.83431952662727CollimonasGet_Organism_entries?organism=SalmonellaSalmonella216.09003008165019354.810650887574SalmonellaGet_Organism_entries?organism=MicrobulbiferMicrobulbifer216.09003008165019345.78698224852076MicrobulbiferGet_Organism_entries?organism=ColwelliaColwellia216.09003008165019336.7633136094675ColwelliaGet_Organism_entries?organism=[Eubacterium][Eubacterium]216.09003008165019327.7396449704142[Eubacterium]Get_Organism_entries?organism=YersiniaYersinia317.84658358401375318.715976331361YersiniaGet_Organism_entries?organism=CapnocytophagaCapnocytophaga317.84658358401375309.6923076923078CapnocytophagaGet_Organism_entries?organism=CaldanaerobiusCaldanaerobius317.84658358401375300.66863905325437CaldanaerobiusGet_Organism_entries?organism=NitrosospiraNitrosospira317.84658358401375291.64497041420117NitrosospiraGet_Organism_entries?organism=EnterococcusEnterococcus317.84658358401375282.6213017751481EnterococcusGet_Organism_entries?organism=CaldicellulosiruptorCaldicellulosiruptor419.60313708637731273.59763313609477CaldicellulosiruptorGet_Organism_entries?organism=ThermotogaThermotoga419.60313708637731264.57396449704146ThermotogaGet_Organism_entries?organism=PaenibacillusPaenibacillus419.60313708637731255.55029585798815PaenibacillusGet_Organism_entries?organism=SerratiaSerratia419.60313708637731246.52662721893495SerratiaGet_Organism_entries?organism=CorynebacteriumCorynebacterium419.60313708637731237.50295857988164CorynebacteriumGet_Organism_entries?organism=StreptomycesStreptomyces419.60313708637731228.47928994082832StreptomycesGet_Organism_entries?organism=RoseburiaRoseburia521.359690588740865219.45562130177512RoseburiaGet_Organism_entries?organism=DickeyaDickeya521.359690588740865210.43195266272204DickeyaGet_Organism_entries?organism=LactococcusLactococcus623.11624409110442201.4082840236686LactococcusGet_Organism_entries?organism=GramellaGramella724.87279759346798192.38461538461542GramellaGet_Organism_entries?organism=VibrioVibrio826.629351095831538183.36094674556222VibrioGet_Organism_entries?organism=AlteromonasAlteromonas826.629351095831538174.3372781065089AlteromonasGet_Organism_entries?organism=XanthomonasXanthomonas826.629351095831538165.3136094674556XanthomonasGet_Organism_entries?organism=ClostridiumClostridium826.629351095831538156.2899408284024ClostridiumGet_Organism_entries?organism=GeobacillusGeobacillus928.385904598195097147.26627218934908GeobacillusGet_Organism_entries?organism=PrevotellaPrevotella928.385904598195097138.242603550296PrevotellaGet_Organism_entries?organism=PseudoalteromonasPseudoalteromonas1030.142458100558656129.21893491124268PseudoalteromonasGet_Organism_entries?organism=ChitinophagaChitinophaga1030.142458100558656120.19526627218934ChitinophagaGet_Organism_entries?organism=ZobelliaZobellia1233.655565105285774111.17159763313614ZobelliaGet_Organism_entries?organism=RuminiclostridiumRuminiclostridium1335.412118607649326102.14792899408295RuminiclostridiumGet_Organism_entries?organism=BacillusBacillus1640.6817791147493.12426035502952BacillusGet_Organism_entries?organism=FlavobacteriumFlavobacterium1640.6817791147484.10059171597632FlavobacteriumGet_Organism_entries?organism=AcinetobacterAcinetobacter1742.4383326171035675.07692307692301AcinetobacterGet_Organism_entries?organism=LactobacillusLactobacillus1945.9514396218306866.05325443786992LactobacillusGet_Organism_entries?organism=StreptococcusStreptococcus2454.7342071336484757.02958579881661StreptococcusGet_Organism_entries?organism=uncultureduncultured3472.2997421572840448.0059171597633unculturedGet_Organism_entries?organism=BifidobacteriumBifidobacterium3981.0825096691018238.9822485207101BifidobacteriumGet_Organism_entries?organism=EscherichiaEscherichia3981.0825096691018229.9585798816569EscherichiaGet_Organism_entries?organism=BacteroidesBacteroides179327.020.934911242603473BacteroidesDistribution of PUL according to taxonomy rank (genus)

Browse dbCAN-PUL by characterization method:

Distribution of PUL according to characterization methodimmunoblotting0.005952380952ATPase assay0.01785714286yeast two hybrid assay0.02976190476Assay of oligogalacturonide uptake in E. coli0.04166666667Smith degradation0.05357142857transport assay0.06547619048 gene deletion mutant and growth assay0.07738095238RT-PCR 0.08928571429clone0.1011904762cosmid library screening0.1130952381promoter assay0.125acid hydrolysis0.1369047619fitness contribution assay0.1488095238insertion sequencing0.1607142857carbon utilization assay0.1726190476protein structure characterization0.1845238095GlcNAc phosphorylation assays0.1964285714reducing-sugar assay0.2083333333protein fingerprinting (MALDI-TOF PMF)0.2202380952genes induced in presence of substrate0.2321428571binding assay0.244047619beta-galactosidase assays0.255952381adhesion assay0.2678571429recombinant protein expression0.2797619048RNA-seq0.2916666667enzymatic product analysis0.3035714286substrate specificity assay0.3154761905enzyme kinetic analysis0.3273809524complementation study0.3392857143primer extension analysis0.3511904762strcutural analysis0.3630952381ion trap liquid chromatography0.375 qPCR0.3869047619immunoprecipitation0.3988095238culureing methods0.4107142857MALDI-TOF/MS0.4226190476rapid plate method growth assay0.4345238095isothermal calorimetric titration0.4464285714enzyme specificity assay0.4583333333proteome fractionation0.4702380952comparative genomics0.4821428571analysis of reaction products0.494047619crystallization0.505952381carbohydrate binding assay0.5178571429transposon mutagenesis0.5297619048SDS-PAGE0.5416666667enzymy activity assay0.5535714286bicinchoninic acid (BCA) reducing-sugar assay0.5654761905enzyme product analysis0.5773809524Southern Blot0.5892857143label-free quantitative proteomics0.6011904762functional enrichment analysis0.6130952381expression of recombinant proteins0.625gas chromatography and mass spectrometry0.6369047619affinity gel electrophoresis0.6488095238target decoy database analysis0.6607142857gene trait matching exercise0.6726190476substrate binding assay0.6845238095gene chips0.6964285714electrophoretic mobility shift assay0.7083333333Western Blot0.7202380952lectin binding assay0.7321428571isothermal titration calorimetry0.744047619liquid chromatography and mass spectrometry0.755952381differential gene expression0.7678571429RT-qPCR0.7797619048Northern Blot0.7916666667high performance anion exchange chromatography0.8035714286clone and expression0.8154761905thin layer chromatography0.8273809524growth assay0.8392857143qRT-PCR0.8511904762mass spectrometry0.8630952381microscopy0.875fosmid library screen0.8869047619RT-PCR0.8988095238sugar utilization assay0.9107142857qPCR0.9226190476NMR0.9345238095gene deletion mutant and growth assay0.9464285714RNA-Seq0.9583333333microarray0.9702380952sequence homology analysis0.9821428571enzyme activity assay0.994047619020406080100120140160Query_Entry_By_Experimental?method=immunoblottingimmunoblotting111.16083916083916928.2435897435898immunoblottingQuery_Entry_By_Experimental?method=ATPase assayATPase assay111.16083916083916917.3461538461539ATPase assayQuery_Entry_By_Experimental?method=yeast two hybrid assayyeast two hybrid assay111.16083916083916906.448717948718yeast two hybrid assayQuery_Entry_By_Experimental?method=Assay of oligogalacturonide uptake in E. coliAssay of oligogalacturonide uptake in E. coli111.16083916083916895.5512820512821Assay of oligogalacturonide uptake in E. coliQuery_Entry_By_Experimental?method=Smith degradationSmith degradation111.16083916083916884.6538461538462Smith degradationQuery_Entry_By_Experimental?method=transport assaytransport assay111.16083916083916873.7564102564103transport assayQuery_Entry_By_Experimental?method= gene deletion mutant and growth assay gene deletion mutant and growth assay111.16083916083916862.8589743589744 gene deletion mutant and growth assayQuery_Entry_By_Experimental?method=RT-PCR RT-PCR 111.16083916083916851.9615384615385RT-PCR Query_Entry_By_Experimental?method=cloneclone111.16083916083916841.0641025641027cloneQuery_Entry_By_Experimental?method=cosmid library screeningcosmid library screening111.16083916083916830.1666666666667cosmid library screeningQuery_Entry_By_Experimental?method=promoter assaypromoter assay111.16083916083916819.2692307692308promoter assayQuery_Entry_By_Experimental?method=acid hydrolysisacid hydrolysis111.16083916083916808.3717948717949acid hydrolysisQuery_Entry_By_Experimental?method=fitness contribution assayfitness contribution assay111.16083916083916797.474358974359fitness contribution assayQuery_Entry_By_Experimental?method=insertion sequencinginsertion sequencing111.16083916083916786.5769230769231insertion sequencingQuery_Entry_By_Experimental?method=carbon utilization assaycarbon utilization assay111.16083916083916775.6794871794872carbon utilization assayQuery_Entry_By_Experimental?method=protein structure characterizationprotein structure characterization111.16083916083916764.7820512820514protein structure characterizationQuery_Entry_By_Experimental?method=GlcNAc phosphorylation assaysGlcNAc phosphorylation assays111.16083916083916753.8846153846155GlcNAc phosphorylation assaysQuery_Entry_By_Experimental?method=reducing-sugar assayreducing-sugar assay111.16083916083916742.9871794871796reducing-sugar assayQuery_Entry_By_Experimental?method=protein fingerprinting (MALDI-TOF PMF)protein fingerprinting (MALDI-TOF PMF)111.16083916083916732.0897435897436protein fingerprinting (MALDI-TOF PMF)Query_Entry_By_Experimental?method=genes induced in presence of substrategenes induced in presence of substrate111.16083916083916721.1923076923077genes induced in presence of substrateQuery_Entry_By_Experimental?method=binding assaybinding assay111.16083916083916710.2948717948718binding assayQuery_Entry_By_Experimental?method=beta-galactosidase assaysbeta-galactosidase assays111.16083916083916699.3974358974359beta-galactosidase assaysQuery_Entry_By_Experimental?method=adhesion assayadhesion assay212.62937062937063688.5000000000001adhesion assayQuery_Entry_By_Experimental?method=recombinant protein expressionrecombinant protein expression212.62937062937063677.6025641025641recombinant protein expressionQuery_Entry_By_Experimental?method=RNA-seqRNA-seq212.62937062937063666.7051282051283RNA-seqQuery_Entry_By_Experimental?method=enzymatic product analysisenzymatic product analysis212.62937062937063655.8076923076924enzymatic product analysisQuery_Entry_By_Experimental?method=substrate specificity assaysubstrate specificity assay212.62937062937063644.9102564102565substrate specificity assayQuery_Entry_By_Experimental?method=enzyme kinetic analysisenzyme kinetic analysis212.62937062937063634.0128205128206enzyme kinetic analysisQuery_Entry_By_Experimental?method=complementation studycomplementation study212.62937062937063623.1153846153846complementation studyQuery_Entry_By_Experimental?method=primer extension analysisprimer extension analysis212.62937062937063612.2179487179487primer extension analysisQuery_Entry_By_Experimental?method=strcutural analysisstrcutural analysis212.62937062937063601.3205128205128strcutural analysisQuery_Entry_By_Experimental?method=ion trap liquid chromatographyion trap liquid chromatography212.62937062937063590.4230769230769ion trap liquid chromatographyQuery_Entry_By_Experimental?method= qPCR qPCR212.62937062937063579.5256410256411 qPCRQuery_Entry_By_Experimental?method=immunoprecipitationimmunoprecipitation212.62937062937063568.6282051282052immunoprecipitationQuery_Entry_By_Experimental?method=culureing methodsculureing methods212.62937062937063557.7307692307693culureing methodsQuery_Entry_By_Experimental?method=MALDI-TOF/MSMALDI-TOF/MS212.62937062937063546.8333333333334MALDI-TOF/MSQuery_Entry_By_Experimental?method=rapid plate method growth assayrapid plate method growth assay314.097902097902097535.9358974358975rapid plate method growth assayQuery_Entry_By_Experimental?method=isothermal calorimetric titrationisothermal calorimetric titration314.097902097902097525.0384615384615isothermal calorimetric titrationQuery_Entry_By_Experimental?method=enzyme specificity assayenzyme specificity assay314.097902097902097514.1410256410257enzyme specificity assayQuery_Entry_By_Experimental?method=proteome fractionationproteome fractionation314.097902097902097503.2435897435897proteome fractionationQuery_Entry_By_Experimental?method=comparative genomicscomparative genomics314.097902097902097492.34615384615387comparative genomicsQuery_Entry_By_Experimental?method=analysis of reaction productsanalysis of reaction products314.097902097902097481.448717948718analysis of reaction productsQuery_Entry_By_Experimental?method=crystallizationcrystallization415.566433566433567470.55128205128204crystallizationQuery_Entry_By_Experimental?method=carbohydrate binding assaycarbohydrate binding assay415.566433566433567459.6538461538462carbohydrate binding assayQuery_Entry_By_Experimental?method=transposon mutagenesistransposon mutagenesis415.566433566433567448.7564102564102transposon mutagenesisQuery_Entry_By_Experimental?method=SDS-PAGESDS-PAGE415.566433566433567437.8589743589744SDS-PAGEQuery_Entry_By_Experimental?method=enzymy activity assayenzymy activity assay415.566433566433567426.9615384615384enzymy activity assayQuery_Entry_By_Experimental?method=bicinchoninic acid (BCA) reducing-sugar assaybicinchoninic acid (BCA) reducing-sugar assay517.034965034965037416.0641025641025bicinchoninic acid (BCA) reducing-sugar assayQuery_Entry_By_Experimental?method=enzyme product analysisenzyme product analysis517.034965034965037405.1666666666667enzyme product analysisQuery_Entry_By_Experimental?method=Southern BlotSouthern Blot618.503496503496503394.2692307692308Southern BlotQuery_Entry_By_Experimental?method=label-free quantitative proteomicslabel-free quantitative proteomics618.503496503496503383.37179487179486label-free quantitative proteomicsQuery_Entry_By_Experimental?method=functional enrichment analysisfunctional enrichment analysis618.503496503496503372.47435897435906functional enrichment analysisQuery_Entry_By_Experimental?method=expression of recombinant proteinsexpression of recombinant proteins618.503496503496503361.57692307692304expression of recombinant proteinsQuery_Entry_By_Experimental?method=gas chromatography and mass spectrometrygas chromatography and mass spectrometry618.503496503496503350.6794871794871gas chromatography and mass spectrometryQuery_Entry_By_Experimental?method=affinity gel electrophoresisaffinity gel electrophoresis719.972027972027973339.7820512820512affinity gel electrophoresisQuery_Entry_By_Experimental?method=target decoy database analysistarget decoy database analysis719.972027972027973328.8846153846154target decoy database analysisQuery_Entry_By_Experimental?method=gene trait matching exercisegene trait matching exercise719.972027972027973317.9871794871796gene trait matching exerciseQuery_Entry_By_Experimental?method=substrate binding assaysubstrate binding assay821.44055944055944307.0897435897435substrate binding assayQuery_Entry_By_Experimental?method=gene chipsgene chips1024.377622377622377296.1923076923077gene chipsQuery_Entry_By_Experimental?method=electrophoretic mobility shift assayelectrophoretic mobility shift assay1125.846153846153847285.2948717948719electrophoretic mobility shift assayQuery_Entry_By_Experimental?method=Western BlotWestern Blot1328.783216783216783274.39743589743586Western BlotQuery_Entry_By_Experimental?method=lectin binding assaylectin binding assay1328.783216783216783263.50000000000006lectin binding assayQuery_Entry_By_Experimental?method=isothermal titration calorimetryisothermal titration calorimetry1430.25174825174825252.60256410256406isothermal titration calorimetryQuery_Entry_By_Experimental?method=liquid chromatography and mass spectrometryliquid chromatography and mass spectrometry1633.18881118881119241.70512820512823liquid chromatography and mass spectrometryQuery_Entry_By_Experimental?method=differential gene expressiondifferential gene expression1734.65734265734265230.80769230769232differential gene expressionQuery_Entry_By_Experimental?method=RT-qPCRRT-qPCR1734.65734265734265219.9102564102564RT-qPCRQuery_Entry_By_Experimental?method=Northern BlotNorthern Blot1836.12587412587412209.0128205128206Northern BlotQuery_Entry_By_Experimental?method=high performance anion exchange chromatographyhigh performance anion exchange chromatography1937.59440559440559198.11538461538447high performance anion exchange chromatographyQuery_Entry_By_Experimental?method=clone and expressionclone and expression2140.531468531468526187.21794871794867clone and expressionQuery_Entry_By_Experimental?method=thin layer chromatographythin layer chromatography2343.46853146853147176.32051282051287thin layer chromatographyQuery_Entry_By_Experimental?method=growth assaygrowth assay2546.4055944055944165.42307692307696growth assayQuery_Entry_By_Experimental?method=qRT-PCRqRT-PCR3053.74825174825173154.52564102564105qRT-PCRQuery_Entry_By_Experimental?method=mass spectrometrymass spectrometry3256.68531468531467143.62820512820514mass spectrometryQuery_Entry_By_Experimental?method=microscopymicroscopy3358.15384615384614132.73076923076923microscopyQuery_Entry_By_Experimental?method=fosmid library screenfosmid library screen3662.559440559440546121.83333333333331fosmid library screenQuery_Entry_By_Experimental?method=RT-PCRRT-PCR4068.43356643356643110.9358974358974RT-PCRQuery_Entry_By_Experimental?method=sugar utilization assaysugar utilization assay4169.90209790209789100.0384615384616sugar utilization assayQuery_Entry_By_Experimental?method=qPCRqPCR4575.7762237762237489.14102564102569qPCRQuery_Entry_By_Experimental?method=NMRNMR4778.7132867132866978.24358974358967NMRQuery_Entry_By_Experimental?method=gene deletion mutant and growth assaygene deletion mutant and growth assay5590.4615384615384467.34615384615387gene deletion mutant and growth assayQuery_Entry_By_Experimental?method=RNA-SeqRNA-Seq5793.3986013986013756.44871794871808RNA-SeqQuery_Entry_By_Experimental?method=microarraymicroarray94147.734265734265745.55128205128205microarrayQuery_Entry_By_Experimental?method=sequence homology analysissequence homology analysis119184.447552447552434.65384615384614sequence homology analysisQuery_Entry_By_Experimental?method=enzyme activity assayenzyme activity assay165252.023.756410256410227enzyme activity assayDistribution of PUL according to characterization method