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PlantCAZyme
Cite: NAR/gkaa742 2020

Statistics

General Statistics

The current release of dbCAN-PUL is based on PubMed searches as of Nov 11 2021.
Currently the dbCAN-PUL database contains:
Total number of PULs: 671 Number of differnet CAZyme families represented in dbCAN-PUL: 184
Number of different represented substrates: 127 Number of genera represented: 97
Number of PUL characterization methods: 77 Number of PULs with CGCs predicted by CGCFinder: 589
Number of CAZyme proteins across all PULs: 2,145 Number of proteins contained in CGCs across all PULs: 7,838

Browse dbCAN-PUL by substrate:

Distribution of PUL according to substratesophorose0.003846153846laminaribiose0.01153846154emulsan0.01923076923oligogalacturonide0.02692307692raffinose-oligosaccharide0.03461538462isomaltotriose0.04230769231arabinofuranose0.05beta-galactoside0.05769230769arabinofuranooligosaccharide0.06538461538lacto-n-triose0.07307692308xanthan0.08076923077aldouronate0.08846153846maltooligosaccharide0.09615384615melezitose0.1038461538gentiobiose0.1115384615panose0.1192307692heparosan0.1269230769fucosyllactose0.1346153846sorbitol0.1423076923sialoglycoconjugate0.15d-galactosamine0.1576923077unsaturated hyaluronate disaccharide0.1653846154chondroitin disaccharide0.1730769231cyclomaltodextrin0.1807692308acetylated glucuronoxylan0.1884615385mannan0.1961538462polysialic acid0.2038461538mannooligosaccharide0.2115384615acarbose0.2192307692cellotriose0.2269230769xylotriose0.2346153846xylodextrin0.2423076923N-acetyl-D-glucosamine0.25galacturonic acid0.2576923077 rhamnose0.2653846154pullulan0.2730769231chitooligosaccharide0.2807692308cellooligosaccharide0.2884615385alpha-mannoside0.2961538462cellodextrin0.3038461538arabino-xylooligosaccharide0.3115384615glucuronoarabinoxylan0.3192307692levoglucosan 0.3269230769β-mannan0.3346153846ribose0.3423076923trehalose0.35stachyose0.3576923077alpha-galactoside0.3653846154ulvan0.3730769231chondroitin sulfate0.3807692308isomaltose0.3884615385mannose0.3961538462sialic acid0.4038461538lipopolysaccharide0.4115384615unknown polysaccharide0.4192307692homogalacturonan0.4269230769glucan0.4346153846polygalacturonic acid0.4423076923dextran0.45glucosamine0.4576923077methylglucuronoarabinoxylan0.4653846154galactomannooligosaccharide0.4730769231beta-mannooligosaccharide0.4807692308arabinogalactan protein0.4884615385galactose0.4961538462glycogen0.5038461538chitobiose0.51153846154-methylumbelliferyl 6-azido-6-deoxy-beta-D-galactoside0.5192307692fucose0.5269230769maltotriose0.5346153846xylobiose0.5423076923N-acetyl-D-galactosamine0.55outer core capsule polysaccharide0.5576923077xylose0.5653846154arabinose0.5730769231beta-galactooligosaccharide0.5807692308xylooligosaccharide0.5884615385maltodextrin0.5961538462fructan0.6038461538beta-glucoside0.6115384615porphyran0.6192307692alpha-glucan0.6269230769levan0.6346153846human milk oligosaccharide0.6423076923inulin0.65arabinogalactan0.6576923077lignocellulose0.6653846154hemicellulose0.6730769231fructooligosaccharide0.6807692308carboxymethylcellulose0.6884615385maltose0.6961538462glycosaminoglycan0.7038461538galactooligosaccharide0.7115384615N-acetylglucosamine0.7192307692plant polysaccharide0.7269230769beta-mannan0.7346153846glucose0.7423076923laminarin0.75alpha-mannan0.7576923077agar0.7653846154nystose0.7730769231raffinose0.7807692308xyloglucan0.7884615385carrageenan0.7961538462rhamnogalacturonan0.8038461538galactan0.8115384615melibiose0.8192307692arabinoxylan0.8269230769starch0.8346153846kestose0.8423076923exopolysaccharide0.85lichenan0.8576923077mucin0.8653846154host glycan0.8730769231chitin0.8807692308glucomannan0.8884615385cellulose0.8961538462arabinan0.9038461538galactomannan0.9115384615lactose0.9192307692cellobiose0.9269230769sucrose0.9346153846alginate0.9423076923beta-glucan0.95O-glycan0.9576923077N-glycan0.9653846154pectin0.9730769231O-antigen0.9807692308xylan0.9884615385capsule polysaccharide0.9961538462010203040506070Get_Substrate_entries?substrate=sophorosesophorose111.7445054945054951215.4763313609467sophoroseGet_Substrate_entries?substrate=laminaribioselaminaribiose111.7445054945054951206.275147928994laminaribioseGet_Substrate_entries?substrate=emulsanemulsan111.7445054945054951197.0739644970413emulsanGet_Substrate_entries?substrate=oligogalacturonideoligogalacturonide111.7445054945054951187.8727810650887oligogalacturonideGet_Substrate_entries?substrate=raffinose-oligosaccharideraffinose-oligosaccharide111.7445054945054951178.6715976331361raffinose-oligosaccharideGet_Substrate_entries?substrate=isomaltotrioseisomaltotriose111.7445054945054951169.4704142011833isomaltotrioseGet_Substrate_entries?substrate=arabinofuranosearabinofuranose111.7445054945054951160.2692307692307arabinofuranoseGet_Substrate_entries?substrate=beta-galactosidebeta-galactoside111.7445054945054951151.0680473372781beta-galactosideGet_Substrate_entries?substrate=arabinofuranooligosaccharidearabinofuranooligosaccharide111.7445054945054951141.8668639053253arabinofuranooligosaccharideGet_Substrate_entries?substrate=lacto-n-trioselacto-n-triose111.7445054945054951132.6656804733727lacto-n-trioseGet_Substrate_entries?substrate=xanthanxanthan111.7445054945054951123.4644970414201xanthanGet_Substrate_entries?substrate=aldouronatealdouronate111.7445054945054951114.2633136094673aldouronateGet_Substrate_entries?substrate=maltooligosaccharidemaltooligosaccharide111.7445054945054951105.0621301775147maltooligosaccharideGet_Substrate_entries?substrate=melezitosemelezitose111.7445054945054951095.8609467455622melezitoseGet_Substrate_entries?substrate=gentiobiosegentiobiose111.7445054945054951086.6597633136093gentiobioseGet_Substrate_entries?substrate=panosepanose111.7445054945054951077.4585798816568panoseGet_Substrate_entries?substrate=heparosanheparosan111.7445054945054951068.2573964497042heparosanGet_Substrate_entries?substrate=fucosyllactosefucosyllactose111.7445054945054951059.0562130177514fucosyllactoseGet_Substrate_entries?substrate=sorbitolsorbitol111.7445054945054951049.8550295857988sorbitolGet_Substrate_entries?substrate=sialoglycoconjugatesialoglycoconjugate111.7445054945054951040.6538461538462sialoglycoconjugateGet_Substrate_entries?substrate=d-galactosamined-galactosamine111.7445054945054951031.4526627218934d-galactosamineGet_Substrate_entries?substrate=unsaturated hyaluronate disaccharideunsaturated hyaluronate disaccharide111.7445054945054951022.2514792899408unsaturated hyaluronate disaccharideGet_Substrate_entries?substrate=chondroitin disaccharidechondroitin disaccharide111.7445054945054951013.0502958579882chondroitin disaccharideGet_Substrate_entries?substrate=cyclomaltodextrincyclomaltodextrin111.7445054945054951003.8491124260355cyclomaltodextrinGet_Substrate_entries?substrate=acetylated glucuronoxylanacetylated glucuronoxylan111.744505494505495994.6479289940829acetylated glucuronoxylanGet_Substrate_entries?substrate=mannanmannan111.744505494505495985.4467455621302mannanGet_Substrate_entries?substrate=polysialic acidpolysialic acid111.744505494505495976.2455621301775polysialic acidGet_Substrate_entries?substrate=mannooligosaccharidemannooligosaccharide111.744505494505495967.0443786982249mannooligosaccharideGet_Substrate_entries?substrate=acarboseacarbose111.744505494505495957.8431952662722acarboseGet_Substrate_entries?substrate=cellotriosecellotriose111.744505494505495948.6420118343195cellotrioseGet_Substrate_entries?substrate=xylotriosexylotriose111.744505494505495939.440828402367xylotrioseGet_Substrate_entries?substrate=xylodextrinxylodextrin111.744505494505495930.2396449704142xylodextrinGet_Substrate_entries?substrate=N-acetyl-D-glucosamineN-acetyl-D-glucosamine111.744505494505495921.0384615384615N-acetyl-D-glucosamineGet_Substrate_entries?substrate=galacturonic acidgalacturonic acid111.744505494505495911.837278106509galacturonic acidGet_Substrate_entries?substrate= rhamnose rhamnose111.744505494505495902.6360946745563 rhamnoseGet_Substrate_entries?substrate=pullulanpullulan111.744505494505495893.4349112426036pullulanGet_Substrate_entries?substrate=chitooligosaccharidechitooligosaccharide111.744505494505495884.2337278106509chitooligosaccharideGet_Substrate_entries?substrate=cellooligosaccharidecellooligosaccharide111.744505494505495875.0325443786983cellooligosaccharideGet_Substrate_entries?substrate=alpha-mannosidealpha-mannoside111.744505494505495865.8313609467456alpha-mannosideGet_Substrate_entries?substrate=cellodextrincellodextrin111.744505494505495856.630177514793cellodextrinGet_Substrate_entries?substrate=arabino-xylooligosaccharidearabino-xylooligosaccharide111.744505494505495847.4289940828402arabino-xylooligosaccharideGet_Substrate_entries?substrate=glucuronoarabinoxylanglucuronoarabinoxylan111.744505494505495838.2278106508876glucuronoarabinoxylanGet_Substrate_entries?substrate=levoglucosan levoglucosan 111.744505494505495829.026627218935levoglucosan Get_Substrate_entries?substrate=β-mannanβ-mannan111.744505494505495819.8254437869823β-mannanGet_Substrate_entries?substrate=riboseribose214.835164835164834810.6242603550296riboseGet_Substrate_entries?substrate=trehalosetrehalose214.835164835164834801.423076923077trehaloseGet_Substrate_entries?substrate=stachyosestachyose214.835164835164834792.2218934911242stachyoseGet_Substrate_entries?substrate=alpha-galactosidealpha-galactoside214.835164835164834783.0207100591716alpha-galactosideGet_Substrate_entries?substrate=ulvanulvan214.835164835164834773.8195266272189ulvanGet_Substrate_entries?substrate=chondroitin sulfatechondroitin sulfate214.835164835164834764.6183431952662chondroitin sulfateGet_Substrate_entries?substrate=isomaltoseisomaltose214.835164835164834755.4171597633136isomaltoseGet_Substrate_entries?substrate=mannosemannose214.835164835164834746.215976331361mannoseGet_Substrate_entries?substrate=sialic acidsialic acid214.835164835164834737.0147928994083sialic acidGet_Substrate_entries?substrate=lipopolysaccharidelipopolysaccharide214.835164835164834727.8136094674556lipopolysaccharideGet_Substrate_entries?substrate=unknown polysaccharideunknown polysaccharide214.835164835164834718.612426035503unknown polysaccharideGet_Substrate_entries?substrate=homogalacturonanhomogalacturonan214.835164835164834709.4112426035502homogalacturonanGet_Substrate_entries?substrate=glucanglucan214.835164835164834700.2100591715977glucanGet_Substrate_entries?substrate=polygalacturonic acidpolygalacturonic acid214.835164835164834691.0088757396451polygalacturonic acidGet_Substrate_entries?substrate=dextrandextran214.835164835164834681.8076923076924dextranGet_Substrate_entries?substrate=glucosamineglucosamine214.835164835164834672.6065088757397glucosamineGet_Substrate_entries?substrate=methylglucuronoarabinoxylanmethylglucuronoarabinoxylan214.835164835164834663.405325443787methylglucuronoarabinoxylanGet_Substrate_entries?substrate=galactomannooligosaccharidegalactomannooligosaccharide214.835164835164834654.2041420118343galactomannooligosaccharideGet_Substrate_entries?substrate=beta-mannooligosaccharidebeta-mannooligosaccharide214.835164835164834645.0029585798817beta-mannooligosaccharideGet_Substrate_entries?substrate=arabinogalactan proteinarabinogalactan protein214.835164835164834635.8017751479291arabinogalactan proteinGet_Substrate_entries?substrate=galactosegalactose317.925824175824175626.6005917159763galactoseGet_Substrate_entries?substrate=glycogenglycogen317.925824175824175617.3994082840237glycogenGet_Substrate_entries?substrate=chitobiosechitobiose317.925824175824175608.198224852071chitobioseGet_Substrate_entries?substrate=4-methylumbelliferyl 6-azido-6-deoxy-beta-D-galactoside4-methylumbelliferyl 6-azido-6-deoxy-beta-D-galactoside317.925824175824175598.99704142011854-methylumbelliferyl 6-azido-6-deoxy-beta-D-galactosideGet_Substrate_entries?substrate=fucosefucose317.925824175824175589.7958579881657fucoseGet_Substrate_entries?substrate=maltotriosemaltotriose317.925824175824175580.594674556213maltotrioseGet_Substrate_entries?substrate=xylobiosexylobiose317.925824175824175571.3934911242604xylobioseGet_Substrate_entries?substrate=N-acetyl-D-galactosamineN-acetyl-D-galactosamine317.925824175824175562.1923076923077N-acetyl-D-galactosamineGet_Substrate_entries?substrate=outer core capsule polysaccharideouter core capsule polysaccharide421.016483516483515552.991124260355outer core capsule polysaccharideGet_Substrate_entries?substrate=xylosexylose421.016483516483515543.7899408284025xyloseGet_Substrate_entries?substrate=arabinosearabinose421.016483516483515534.5887573964498arabinoseGet_Substrate_entries?substrate=beta-galactooligosaccharidebeta-galactooligosaccharide421.016483516483515525.3875739644972beta-galactooligosaccharideGet_Substrate_entries?substrate=xylooligosaccharidexylooligosaccharide421.016483516483515516.1863905325444xylooligosaccharideGet_Substrate_entries?substrate=maltodextrinmaltodextrin421.016483516483515506.9852071005917maltodextrinGet_Substrate_entries?substrate=fructanfructan524.107142857142854497.7840236686391fructanGet_Substrate_entries?substrate=beta-glucosidebeta-glucoside524.107142857142854488.5828402366864beta-glucosideGet_Substrate_entries?substrate=porphyranporphyran524.107142857142854479.3816568047336porphyranGet_Substrate_entries?substrate=alpha-glucanalpha-glucan524.107142857142854470.180473372781alpha-glucanGet_Substrate_entries?substrate=levanlevan524.107142857142854460.9792899408283levanGet_Substrate_entries?substrate=human milk oligosaccharidehuman milk oligosaccharide524.107142857142854451.77810650887585human milk oligosaccharideGet_Substrate_entries?substrate=inulininulin524.107142857142854442.57692307692304inulinGet_Substrate_entries?substrate=arabinogalactanarabinogalactan627.197802197802194433.37573964497034arabinogalactanGet_Substrate_entries?substrate=lignocelluloselignocellulose627.197802197802194424.17455621301775lignocelluloseGet_Substrate_entries?substrate=hemicellulosehemicellulose627.197802197802194414.97337278106505hemicelluloseGet_Substrate_entries?substrate=fructooligosaccharidefructooligosaccharide627.197802197802194405.77218934911247fructooligosaccharideGet_Substrate_entries?substrate=carboxymethylcellulosecarboxymethylcellulose627.197802197802194396.57100591715977carboxymethylcelluloseGet_Substrate_entries?substrate=maltosemaltose730.288461538461533387.36982248520707maltoseGet_Substrate_entries?substrate=glycosaminoglycanglycosaminoglycan730.288461538461533378.1686390532545glycosaminoglycanGet_Substrate_entries?substrate=galactooligosaccharidegalactooligosaccharide730.288461538461533368.96745562130167galactooligosaccharideGet_Substrate_entries?substrate=N-acetylglucosamineN-acetylglucosamine730.288461538461533359.7662721893492N-acetylglucosamineGet_Substrate_entries?substrate=plant polysaccharideplant polysaccharide730.288461538461533350.5650887573965plant polysaccharideGet_Substrate_entries?substrate=beta-mannanbeta-mannan833.379120879120876341.3639053254438beta-mannanGet_Substrate_entries?substrate=glucoseglucose833.379120879120876332.1627218934911glucoseGet_Substrate_entries?substrate=laminarinlaminarin833.379120879120876322.9615384615384laminarinGet_Substrate_entries?substrate=alpha-mannanalpha-mannan833.379120879120876313.7603550295858alpha-mannanGet_Substrate_entries?substrate=agaragar833.379120879120876304.5591715976332agarGet_Substrate_entries?substrate=nystosenystose833.379120879120876295.3579881656804nystoseGet_Substrate_entries?substrate=raffinoseraffinose936.46978021978022286.1568047337278raffinoseGet_Substrate_entries?substrate=xyloglucanxyloglucan936.46978021978022276.9556213017751xyloglucanGet_Substrate_entries?substrate=carrageenancarrageenan936.46978021978022267.7544378698224carrageenanGet_Substrate_entries?substrate=rhamnogalacturonanrhamnogalacturonan936.46978021978022258.55325443786984rhamnogalacturonanGet_Substrate_entries?substrate=galactangalactan1039.56043956043955249.35207100591714galactanGet_Substrate_entries?substrate=melibiosemelibiose1039.56043956043955240.15088757396455melibioseGet_Substrate_entries?substrate=arabinoxylanarabinoxylan1039.56043956043955230.94970414201174arabinoxylanGet_Substrate_entries?substrate=starchstarch1142.65109890109889221.74852071005915starchGet_Substrate_entries?substrate=kestosekestose1245.741758241758234212.54733727810645kestoseGet_Substrate_entries?substrate=exopolysaccharideexopolysaccharide1245.741758241758234203.34615384615387exopolysaccharideGet_Substrate_entries?substrate=lichenanlichenan1348.83241758241758194.14497041420128lichenanGet_Substrate_entries?substrate=mucinmucin1451.92307692307692184.94378698224847mucinGet_Substrate_entries?substrate=host glycanhost glycan1451.92307692307692175.74260355029588host glycanGet_Substrate_entries?substrate=chitinchitin1555.01373626373625166.54142011834307chitinGet_Substrate_entries?substrate=glucomannanglucomannan1555.01373626373625157.34023668639048glucomannanGet_Substrate_entries?substrate=cellulosecellulose1658.10439560439559148.13905325443767celluloseGet_Substrate_entries?substrate=arabinanarabinan1658.10439560439559138.9378698224853arabinanGet_Substrate_entries?substrate=galactomannangalactomannan1658.10439560439559129.73668639053272galactomannanGet_Substrate_entries?substrate=lactoselactose1761.195054945054935120.53550295857994lactoseGet_Substrate_entries?substrate=cellobiosecellobiose2379.73901098901098111.33431952662713cellobioseGet_Substrate_entries?substrate=sucrosesucrose2379.73901098901098102.13313609467454sucroseGet_Substrate_entries?substrate=alginatealginate2482.8296703296703292.93195266272195alginateGet_Substrate_entries?substrate=beta-glucanbeta-glucan2998.2829670329670283.73076923076937beta-glucanGet_Substrate_entries?substrate=O-glycanO-glycan31104.4642857142857174.52958579881656O-glycanGet_Substrate_entries?substrate=N-glycanN-glycan35116.8269230769230765.32840236686374N-glycanGet_Substrate_entries?substrate=pectinpectin38126.0989010989010856.12721893491115pectinGet_Substrate_entries?substrate=O-antigenO-antigen39129.189560439560446.92603550295856O-antigenGet_Substrate_entries?substrate=xylanxylan48157.0054945054944837.72485207100598xylanGet_Substrate_entries?substrate=capsule polysaccharidecapsule polysaccharide70224.9999999999999728.52366863905339capsule polysaccharideDistribution of PUL according to substrate

Browse dbCAN-PUL by genus:

Distribution of PUL according to taxonomy rank (genus)Listeria0.005050505051Leuconostoc0.01515151515Streptobacillus0.02525252525Azotobacter0.03535353535[Ruminococcus]0.04545454545Spiroplasma0.05555555556Caulobacter0.06565656566Cellulophaga0.07575757576Maricaulis0.08585858586Stenotrophomonas0.09595959596gut0.1060606061Acidiphilium0.1161616162Agrobacterium0.1262626263Leeuwenhoekiella0.1363636364Franconibacter0.1464646465Saccharophagus0.1565656566Polaribacter0.1666666667Pectobacterium0.1767676768Tannerella0.1868686869Halorubrum0.196969697Haloferax0.2070707071Providencia0.2171717172Gluconacetobacter0.2272727273Aliivibrio0.2373737374Leptotrichia0.2474747475Cupriavidus0.2575757576Coprothermobacter0.2676767677Ralstonia0.2777777778Sinorhizobium0.2878787879Clavibacter0.297979798Actinoplanes0.3080808081Paraglaciecola0.3181818182Photobacterium0.3282828283Thermoanaerobacterium0.3383838384Parageobacillus0.3484848485Wenyingzhuangia0.3585858586Rhodothermus0.3686868687Winogradskyella0.3787878788Muricauda0.3888888889Pseudooceanicola0.398989899Eubacterium0.4090909091Gilvimarinus0.4191919192Phocaeicola0.4292929293Cytophaga0.4393939394Thermus0.4494949495Klebsiella0.4595959596feces0.4696969697Dysgonomonas0.4797979798Thermococcus0.4898989899Salegentibacter0.5Kribbella0.5101010101Cellvibrio0.5202020202Sphingomonas0.5303030303termite0.5404040404Pseudomonas0.5505050505Staphylococcus0.5606060606Collimonas0.5707070707Salmonella0.5808080808Microbulbifer0.5909090909[Eubacterium]0.601010101Coprococcus0.6111111111Maribacter0.6212121212Yersinia0.6313131313Capnocytophaga0.6414141414Caldanaerobius0.6515151515Nitrosospira0.6616161616Enterococcus0.6717171717Colwellia0.6818181818Caldicellulosiruptor0.6919191919Faecalibacterium0.702020202Thermotoga0.7121212121Paenibacillus0.7222222222Serratia0.7323232323Corynebacterium0.7424242424Anaerostipes0.7525252525Dickeya0.7626262626Streptomyces0.7727272727Lactococcus0.7828282828Gramella0.7929292929Roseburia0.803030303Vibrio0.8131313131Alteromonas0.8232323232Xanthomonas0.8333333333Clostridium0.8434343434Geobacillus0.8535353535Pseudoalteromonas0.8636363636Chitinophaga0.8737373737Zobellia0.8838383838Ruminiclostridium0.8939393939Bacillus0.904040404Flavobacterium0.9141414141Lactobacillus0.9242424242Prevotella0.9343434343Streptococcus0.9444444444Acinetobacter0.9545454545uncultured0.9646464646Escherichia0.9747474747Bifidobacterium0.9848484848Bacteroides0.9949494949020406080100120140160180Get_Organism_entries?organism=ListeriaListeria114.231781376518217911.5027195027195ListeriaGet_Organism_entries?organism=LeuconostocLeuconostoc114.231781376518217902.4312354312355LeuconostocGet_Organism_entries?organism=StreptobacillusStreptobacillus114.231781376518217893.3597513597514StreptobacillusGet_Organism_entries?organism=AzotobacterAzotobacter114.231781376518217884.2882672882673AzotobacterGet_Organism_entries?organism=[Ruminococcus][Ruminococcus]114.231781376518217875.2167832167833[Ruminococcus]Get_Organism_entries?organism=SpiroplasmaSpiroplasma114.231781376518217866.1452991452992SpiroplasmaGet_Organism_entries?organism=CaulobacterCaulobacter114.231781376518217857.073815073815CaulobacterGet_Organism_entries?organism=CellulophagaCellulophaga114.231781376518217848.002331002331CellulophagaGet_Organism_entries?organism=MaricaulisMaricaulis114.231781376518217838.9308469308469MaricaulisGet_Organism_entries?organism=StenotrophomonasStenotrophomonas114.231781376518217829.8593628593628StenotrophomonasGet_Organism_entries?organism=gutgut114.231781376518217820.7878787878788gutGet_Organism_entries?organism=AcidiphiliumAcidiphilium114.231781376518217811.7163947163947AcidiphiliumGet_Organism_entries?organism=AgrobacteriumAgrobacterium114.231781376518217802.6449106449106AgrobacteriumGet_Organism_entries?organism=LeeuwenhoekiellaLeeuwenhoekiella114.231781376518217793.5734265734266LeeuwenhoekiellaGet_Organism_entries?organism=FranconibacterFranconibacter114.231781376518217784.5019425019425FranconibacterGet_Organism_entries?organism=SaccharophagusSaccharophagus114.231781376518217775.4304584304584SaccharophagusGet_Organism_entries?organism=PolaribacterPolaribacter114.231781376518217766.3589743589744PolaribacterGet_Organism_entries?organism=PectobacteriumPectobacterium114.231781376518217757.2874902874903PectobacteriumGet_Organism_entries?organism=TannerellaTannerella114.231781376518217748.2160062160062TannerellaGet_Organism_entries?organism=HalorubrumHalorubrum114.231781376518217739.1445221445222HalorubrumGet_Organism_entries?organism=HaloferaxHaloferax114.231781376518217730.0730380730381HaloferaxGet_Organism_entries?organism=ProvidenciaProvidencia114.231781376518217721.001554001554ProvidenciaGet_Organism_entries?organism=GluconacetobacterGluconacetobacter114.231781376518217711.93006993007GluconacetobacterGet_Organism_entries?organism=AliivibrioAliivibrio114.231781376518217702.8585858585859AliivibrioGet_Organism_entries?organism=LeptotrichiaLeptotrichia114.231781376518217693.7871017871018LeptotrichiaGet_Organism_entries?organism=CupriavidusCupriavidus114.231781376518217684.7156177156177CupriavidusGet_Organism_entries?organism=CoprothermobacterCoprothermobacter114.231781376518217675.6441336441336CoprothermobacterGet_Organism_entries?organism=RalstoniaRalstonia114.231781376518217666.5726495726497RalstoniaGet_Organism_entries?organism=SinorhizobiumSinorhizobium114.231781376518217657.5011655011656SinorhizobiumGet_Organism_entries?organism=ClavibacterClavibacter114.231781376518217648.4296814296815ClavibacterGet_Organism_entries?organism=ActinoplanesActinoplanes114.231781376518217639.3581973581973ActinoplanesGet_Organism_entries?organism=ParaglaciecolaParaglaciecola114.231781376518217630.2867132867133ParaglaciecolaGet_Organism_entries?organism=PhotobacteriumPhotobacterium114.231781376518217621.2152292152291PhotobacteriumGet_Organism_entries?organism=ThermoanaerobacteriumThermoanaerobacterium114.231781376518217612.1437451437452ThermoanaerobacteriumGet_Organism_entries?organism=ParageobacillusParageobacillus114.231781376518217603.0722610722611ParageobacillusGet_Organism_entries?organism=WenyingzhuangiaWenyingzhuangia114.231781376518217594.000777000777WenyingzhuangiaGet_Organism_entries?organism=RhodothermusRhodothermus114.231781376518217584.9292929292928RhodothermusGet_Organism_entries?organism=WinogradskyellaWinogradskyella114.231781376518217575.8578088578088WinogradskyellaGet_Organism_entries?organism=MuricaudaMuricauda114.231781376518217566.7863247863248MuricaudaGet_Organism_entries?organism=PseudooceanicolaPseudooceanicola114.231781376518217557.7148407148406PseudooceanicolaGet_Organism_entries?organism=EubacteriumEubacterium114.231781376518217548.6433566433567EubacteriumGet_Organism_entries?organism=GilvimarinusGilvimarinus114.231781376518217539.5718725718725GilvimarinusGet_Organism_entries?organism=PhocaeicolaPhocaeicola114.231781376518217530.5003885003885PhocaeicolaGet_Organism_entries?organism=CytophagaCytophaga114.231781376518217521.4289044289044CytophagaGet_Organism_entries?organism=ThermusThermus215.88663967611336512.3574203574203ThermusGet_Organism_entries?organism=KlebsiellaKlebsiella215.88663967611336503.28593628593626KlebsiellaGet_Organism_entries?organism=fecesfeces215.88663967611336494.21445221445225fecesGet_Organism_entries?organism=DysgonomonasDysgonomonas215.88663967611336485.14296814296813DysgonomonasGet_Organism_entries?organism=ThermococcusThermococcus215.88663967611336476.07148407148406ThermococcusGet_Organism_entries?organism=SalegentibacterSalegentibacter215.88663967611336467.00000000000006SalegentibacterGet_Organism_entries?organism=KribbellaKribbella215.88663967611336457.9285159285159KribbellaGet_Organism_entries?organism=CellvibrioCellvibrio215.88663967611336448.85703185703187CellvibrioGet_Organism_entries?organism=SphingomonasSphingomonas215.88663967611336439.78554778554775SphingomonasGet_Organism_entries?organism=termitetermite215.88663967611336430.71406371406374termiteGet_Organism_entries?organism=PseudomonasPseudomonas215.88663967611336421.6425796425797PseudomonasGet_Organism_entries?organism=StaphylococcusStaphylococcus215.88663967611336412.5710955710955StaphylococcusGet_Organism_entries?organism=CollimonasCollimonas215.88663967611336403.49961149961155CollimonasGet_Organism_entries?organism=SalmonellaSalmonella215.88663967611336394.42812742812737SalmonellaGet_Organism_entries?organism=MicrobulbiferMicrobulbifer215.88663967611336385.3566433566433MicrobulbiferGet_Organism_entries?organism=[Eubacterium][Eubacterium]215.88663967611336376.28515928515924[Eubacterium]Get_Organism_entries?organism=CoprococcusCoprococcus215.88663967611336367.2136752136752CoprococcusGet_Organism_entries?organism=MaribacterMaribacter215.88663967611336358.1421911421912MaribacterGet_Organism_entries?organism=YersiniaYersinia317.541497975708502349.07070707070704YersiniaGet_Organism_entries?organism=CapnocytophagaCapnocytophaga317.541497975708502339.9992229992231CapnocytophagaGet_Organism_entries?organism=CaldanaerobiusCaldanaerobius317.541497975708502330.9277389277389CaldanaerobiusGet_Organism_entries?organism=NitrosospiraNitrosospira317.541497975708502321.85625485625485NitrosospiraGet_Organism_entries?organism=EnterococcusEnterococcus317.541497975708502312.7847707847708EnterococcusGet_Organism_entries?organism=ColwelliaColwellia317.541497975708502303.7132867132867ColwelliaGet_Organism_entries?organism=CaldicellulosiruptorCaldicellulosiruptor419.196356275303643294.64180264180266CaldicellulosiruptorGet_Organism_entries?organism=FaecalibacteriumFaecalibacterium419.196356275303643285.5703185703185FaecalibacteriumGet_Organism_entries?organism=ThermotogaThermotoga419.196356275303643276.4988344988345ThermotogaGet_Organism_entries?organism=PaenibacillusPaenibacillus419.196356275303643267.42735042735046PaenibacillusGet_Organism_entries?organism=SerratiaSerratia419.196356275303643258.3558663558664SerratiaGet_Organism_entries?organism=CorynebacteriumCorynebacterium419.196356275303643249.28438228438233CorynebacteriumGet_Organism_entries?organism=AnaerostipesAnaerostipes419.196356275303643240.21289821289827AnaerostipesGet_Organism_entries?organism=DickeyaDickeya520.851214574898783231.1414141414142DickeyaGet_Organism_entries?organism=StreptomycesStreptomyces520.851214574898783222.06993006993014StreptomycesGet_Organism_entries?organism=LactococcusLactococcus622.506072874493924212.99844599844596LactococcusGet_Organism_entries?organism=GramellaGramella724.16093117408907203.926961926962GramellaGet_Organism_entries?organism=RoseburiaRoseburia825.815789473684212194.85547785547783RoseburiaGet_Organism_entries?organism=VibrioVibrio825.815789473684212185.78399378399376VibrioGet_Organism_entries?organism=AlteromonasAlteromonas825.815789473684212176.7125097125097AlteromonasGet_Organism_entries?organism=XanthomonasXanthomonas825.815789473684212167.64102564102564XanthomonasGet_Organism_entries?organism=ClostridiumClostridium825.815789473684212158.56954156954157ClostridiumGet_Organism_entries?organism=GeobacillusGeobacillus927.470647773279353149.4980574980575GeobacillusGet_Organism_entries?organism=PseudoalteromonasPseudoalteromonas1029.125506072874494140.42657342657355PseudoalteromonasGet_Organism_entries?organism=ChitinophagaChitinophaga1029.125506072874494131.35508935508938ChitinophagaGet_Organism_entries?organism=ZobelliaZobellia1232.435222672064775122.28360528360531ZobelliaGet_Organism_entries?organism=RuminiclostridiumRuminiclostridium1334.090080971659916113.21212121212125RuminiclostridiumGet_Organism_entries?organism=BacillusBacillus1639.054655870445345104.14063714063718BacillusGet_Organism_entries?organism=FlavobacteriumFlavobacterium1639.05465587044534595.06915306915312FlavobacteriumGet_Organism_entries?organism=LactobacillusLactobacillus2045.6740890688259185.99766899766894LactobacillusGet_Organism_entries?organism=PrevotellaPrevotella2248.98380566801619676.92618492618487PrevotellaGet_Organism_entries?organism=StreptococcusStreptococcus2553.9483805668016267.85470085470081StreptococcusGet_Organism_entries?organism=AcinetobacterAcinetobacter2553.9483805668016258.78321678321674AcinetobacterGet_Organism_entries?organism=uncultureduncultured3468.8421052631578949.71173271173267unculturedGet_Organism_entries?organism=EscherichiaEscherichia3977.1163967611335940.64024864024872EscherichiaGet_Organism_entries?organism=BifidobacteriumBifidobacterium4180.4261133603238731.568764568764657BifidobacteriumGet_Organism_entries?organism=BacteroidesBacteroides190327.022.497280497280595BacteroidesDistribution of PUL according to taxonomy rank (genus)

Browse dbCAN-PUL by characterization method:

Distribution of PUL according to characterization methodimmunoblotting0.00625ATPase assay0.01875yeast two hybrid assay0.03125Assay of oligogalacturonide uptake in E. coli0.04375transport assay0.05625RT-PCR 0.06875cosmid library screening0.08125promoter assay0.09375acid hydrolysis0.10625fitness contribution assay0.11875insertion sequencing0.13125carbon utilization assay0.14375protein structure characterization0.15625GlcNAc phosphorylation assays0.16875reducing-sugar assay0.18125protein fingerprinting (MALDI-TOF PMF)0.19375genes induced in presence of substrate0.20625beta-galactosidase assays0.21875Western blot0.23125adhesion assay0.24375isothermal calorimetric titration0.25625substrate specificity assay0.26875clone0.28125enzyme kinetic analysis0.29375primer extension analysis0.30625strcutural analysis0.31875ion trap liquid chromatography0.33125immunoprecipitation0.34375culureing methods0.35625MALDI-TOF/MS0.36875rapid plate method growth assay0.38125enzyme specificity assay0.39375proteome fractionation0.40625comparative genomics0.41875analysis of reaction products0.43125transposon mutagenesis0.44375complementation study0.45625SDS-PAGE0.46875liquid chromatography0.48125UHPLC-MS0.49375bicinchoninic acid (BCA) reducing-sugar assay0.50625RNA-seq0.51875Southern Blot0.53125label-free quantitative proteomics0.54375functional enrichment analysis0.55625gas chromatography and mass spectrometry0.56875target decoy database analysis0.58125gene trait matching exercise0.59375enzymatic product analysis0.60625crystallization0.61875Smith degradation0.63125affinity gel electrophoresis0.64375gene chips0.65625electrophoretic mobility shift assay0.66875Western Blot0.68125lectin binding assay0.69375substrate binding assay0.70625isothermal titration calorimetry0.71875differential gene expression0.73125Northern Blot0.74375liquid chromatography and mass spectrometry0.75625RT-qPCR0.76875recombinant protein expression0.78125clone and expression0.79375high performance anion exchange chromatography0.80625growth assay0.81875thin layer chromatography0.83125qRT-PCR0.84375microscopy0.85625fosmid library screen0.86875mass spectrometry0.88125RT-PCR0.89375sugar utilization assay0.90625qPCR0.91875gene deletion mutant and growth assay0.93125NMR0.94375RNA-Seq0.95625microarray0.96875sequence homology analysis0.98125enzyme activity assay0.99375020406080100120140160Query_Entry_By_Experimental?method=immunoblottingimmunoblotting111.053586862575628881.1826923076924immunoblottingQuery_Entry_By_Experimental?method=ATPase assayATPase assay111.053586862575628870.3173076923077ATPase assayQuery_Entry_By_Experimental?method=yeast two hybrid assayyeast two hybrid assay111.053586862575628859.4519230769231yeast two hybrid assayQuery_Entry_By_Experimental?method=Assay of oligogalacturonide uptake in E. coliAssay of oligogalacturonide uptake in E. coli111.053586862575628848.5865384615385Assay of oligogalacturonide uptake in E. coliQuery_Entry_By_Experimental?method=transport assaytransport assay111.053586862575628837.7211538461539transport assayQuery_Entry_By_Experimental?method=RT-PCR RT-PCR 111.053586862575628826.8557692307693RT-PCR Query_Entry_By_Experimental?method=cosmid library screeningcosmid library screening111.053586862575628815.9903846153846cosmid library screeningQuery_Entry_By_Experimental?method=promoter assaypromoter assay111.053586862575628805.1250000000001promoter assayQuery_Entry_By_Experimental?method=acid hydrolysisacid hydrolysis111.053586862575628794.2596153846155acid hydrolysisQuery_Entry_By_Experimental?method=fitness contribution assayfitness contribution assay111.053586862575628783.3942307692308fitness contribution assayQuery_Entry_By_Experimental?method=insertion sequencinginsertion sequencing111.053586862575628772.5288461538462insertion sequencingQuery_Entry_By_Experimental?method=carbon utilization assaycarbon utilization assay111.053586862575628761.6634615384615carbon utilization assayQuery_Entry_By_Experimental?method=protein structure characterizationprotein structure characterization111.053586862575628750.798076923077protein structure characterizationQuery_Entry_By_Experimental?method=GlcNAc phosphorylation assaysGlcNAc phosphorylation assays111.053586862575628739.9326923076924GlcNAc phosphorylation assaysQuery_Entry_By_Experimental?method=reducing-sugar assayreducing-sugar assay111.053586862575628729.0673076923077reducing-sugar assayQuery_Entry_By_Experimental?method=protein fingerprinting (MALDI-TOF PMF)protein fingerprinting (MALDI-TOF PMF)111.053586862575628718.2019230769232protein fingerprinting (MALDI-TOF PMF)Query_Entry_By_Experimental?method=genes induced in presence of substrategenes induced in presence of substrate111.053586862575628707.3365384615385genes induced in presence of substrateQuery_Entry_By_Experimental?method=beta-galactosidase assaysbeta-galactosidase assays111.053586862575628696.4711538461539beta-galactosidase assaysQuery_Entry_By_Experimental?method=Western blotWestern blot111.053586862575628685.6057692307693Western blotQuery_Entry_By_Experimental?method=adhesion assayadhesion assay212.41486603284356674.7403846153846adhesion assayQuery_Entry_By_Experimental?method=isothermal calorimetric titrationisothermal calorimetric titration212.41486603284356663.875isothermal calorimetric titrationQuery_Entry_By_Experimental?method=substrate specificity assaysubstrate specificity assay212.41486603284356653.0096153846154substrate specificity assayQuery_Entry_By_Experimental?method=cloneclone212.41486603284356642.1442307692308cloneQuery_Entry_By_Experimental?method=enzyme kinetic analysisenzyme kinetic analysis212.41486603284356631.2788461538462enzyme kinetic analysisQuery_Entry_By_Experimental?method=primer extension analysisprimer extension analysis212.41486603284356620.4134615384615primer extension analysisQuery_Entry_By_Experimental?method=strcutural analysisstrcutural analysis212.41486603284356609.548076923077strcutural analysisQuery_Entry_By_Experimental?method=ion trap liquid chromatographyion trap liquid chromatography212.41486603284356598.6826923076923ion trap liquid chromatographyQuery_Entry_By_Experimental?method=immunoprecipitationimmunoprecipitation212.41486603284356587.8173076923077immunoprecipitationQuery_Entry_By_Experimental?method=culureing methodsculureing methods212.41486603284356576.9519230769231culureing methodsQuery_Entry_By_Experimental?method=MALDI-TOF/MSMALDI-TOF/MS212.41486603284356566.0865384615385MALDI-TOF/MSQuery_Entry_By_Experimental?method=rapid plate method growth assayrapid plate method growth assay313.776145203111497555.2211538461539rapid plate method growth assayQuery_Entry_By_Experimental?method=enzyme specificity assayenzyme specificity assay313.776145203111497544.3557692307692enzyme specificity assayQuery_Entry_By_Experimental?method=proteome fractionationproteome fractionation313.776145203111497533.4903846153846proteome fractionationQuery_Entry_By_Experimental?method=comparative genomicscomparative genomics313.776145203111497522.6250000000001comparative genomicsQuery_Entry_By_Experimental?method=analysis of reaction productsanalysis of reaction products313.776145203111497511.75961538461536analysis of reaction productsQuery_Entry_By_Experimental?method=transposon mutagenesistransposon mutagenesis415.137424373379428500.8942307692308transposon mutagenesisQuery_Entry_By_Experimental?method=complementation studycomplementation study415.137424373379428490.0288461538462complementation studyQuery_Entry_By_Experimental?method=SDS-PAGESDS-PAGE415.137424373379428479.16346153846155SDS-PAGEQuery_Entry_By_Experimental?method=liquid chromatographyliquid chromatography415.137424373379428468.29807692307696liquid chromatographyQuery_Entry_By_Experimental?method=UHPLC-MSUHPLC-MS415.137424373379428457.4326923076924UHPLC-MSQuery_Entry_By_Experimental?method=bicinchoninic acid (BCA) reducing-sugar assaybicinchoninic acid (BCA) reducing-sugar assay516.498703543647366446.56730769230774bicinchoninic acid (BCA) reducing-sugar assayQuery_Entry_By_Experimental?method=RNA-seqRNA-seq516.498703543647366435.70192307692315RNA-seqQuery_Entry_By_Experimental?method=Southern BlotSouthern Blot617.8599827139153424.83653846153845Southern BlotQuery_Entry_By_Experimental?method=label-free quantitative proteomicslabel-free quantitative proteomics617.8599827139153413.97115384615387label-free quantitative proteomicsQuery_Entry_By_Experimental?method=functional enrichment analysisfunctional enrichment analysis617.8599827139153403.1057692307692functional enrichment analysisQuery_Entry_By_Experimental?method=gas chromatography and mass spectrometrygas chromatography and mass spectrometry617.8599827139153392.24038461538464gas chromatography and mass spectrometryQuery_Entry_By_Experimental?method=target decoy database analysistarget decoy database analysis719.221261884183235381.3750000000001target decoy database analysisQuery_Entry_By_Experimental?method=gene trait matching exercisegene trait matching exercise719.221261884183235370.50961538461536gene trait matching exerciseQuery_Entry_By_Experimental?method=enzymatic product analysisenzymatic product analysis820.582541054451166359.64423076923083enzymatic product analysisQuery_Entry_By_Experimental?method=crystallizationcrystallization921.943820224719104348.7788461538462crystallizationQuery_Entry_By_Experimental?method=Smith degradationSmith degradation921.943820224719104337.91346153846155Smith degradationQuery_Entry_By_Experimental?method=affinity gel electrophoresisaffinity gel electrophoresis921.943820224719104327.048076923077affinity gel electrophoresisQuery_Entry_By_Experimental?method=gene chipsgene chips1023.30509939498704316.18269230769226gene chipsQuery_Entry_By_Experimental?method=electrophoretic mobility shift assayelectrophoretic mobility shift assay1226.027657735522904305.31730769230774electrophoretic mobility shift assayQuery_Entry_By_Experimental?method=Western BlotWestern Blot1327.38893690579084294.4519230769231Western BlotQuery_Entry_By_Experimental?method=lectin binding assaylectin binding assay1327.38893690579084283.58653846153845lectin binding assayQuery_Entry_By_Experimental?method=substrate binding assaysubstrate binding assay1530.111495246326708272.7211538461539substrate binding assayQuery_Entry_By_Experimental?method=isothermal titration calorimetryisothermal titration calorimetry1631.47277441659464261.8557692307693isothermal titration calorimetryQuery_Entry_By_Experimental?method=differential gene expressiondifferential gene expression1732.834053586862574250.99038461538458differential gene expressionQuery_Entry_By_Experimental?method=Northern BlotNorthern Blot1834.19533275713051240.12499999999994Northern BlotQuery_Entry_By_Experimental?method=liquid chromatography and mass spectrometryliquid chromatography and mass spectrometry1834.19533275713051229.2596153846153liquid chromatography and mass spectrometryQuery_Entry_By_Experimental?method=RT-qPCRRT-qPCR2036.91789109766638218.39423076923077RT-qPCRQuery_Entry_By_Experimental?method=recombinant protein expressionrecombinant protein expression2442.363007778738115207.52884615384613recombinant protein expressionQuery_Entry_By_Experimental?method=clone and expressionclone and expression2543.72428694900605196.6634615384615clone and expressionQuery_Entry_By_Experimental?method=high performance anion exchange chromatographyhigh performance anion exchange chromatography2645.085566119273984185.79807692307685high performance anion exchange chromatographyQuery_Entry_By_Experimental?method=growth assaygrowth assay2847.808124459809854174.93269230769232growth assayQuery_Entry_By_Experimental?method=thin layer chromatographythin layer chromatography2847.808124459809854164.06730769230768thin layer chromatographyQuery_Entry_By_Experimental?method=qRT-PCRqRT-PCR3354.614520311149526153.20192307692304qRT-PCRQuery_Entry_By_Experimental?method=microscopymicroscopy3354.614520311149526142.3365384615385microscopyQuery_Entry_By_Experimental?method=fosmid library screenfosmid library screen3658.69835782195333131.47115384615375fosmid library screenQuery_Entry_By_Experimental?method=mass spectrometrymass spectrometry3962.782195332757134120.60576923076923mass spectrometryQuery_Entry_By_Experimental?method=RT-PCRRT-PCR4064.14347450302506109.74038461538458RT-PCRQuery_Entry_By_Experimental?method=sugar utilization assaysugar utilization assay4469.588591184096898.87499999999994sugar utilization assayQuery_Entry_By_Experimental?method=qPCRqPCR5280.4788245462402888.00961538461542qPCRQuery_Entry_By_Experimental?method=gene deletion mutant and growth assaygene deletion mutant and growth assay5888.6464995678478877.14423076923066gene deletion mutant and growth assayQuery_Entry_By_Experimental?method=NMRNMR6091.3690579083837566.27884615384613NMRQuery_Entry_By_Experimental?method=RNA-SeqRNA-Seq73109.0656871218668955.41346153846162RNA-SeqQuery_Entry_By_Experimental?method=microarraymicroarray94137.652549697493544.54807692307686microarrayQuery_Entry_By_Experimental?method=sequence homology analysissequence homology analysis125179.8522039757994533.682692307692335sequence homology analysisQuery_Entry_By_Experimental?method=enzyme activity assayenzyme activity assay178252.022.817307692307693enzyme activity assayDistribution of PUL according to characterization method