| PULID | Characterization Method(s) | Substrate | Organism | Publication | Publish Date | Type | Num Genes | Num CAZymes | CazyFamily |
|---|---|---|---|---|---|---|---|---|---|
| PUL0012 | enzyme activity assay | chitin | Vibrio cholerae | 28683122 The nucleoid occlusion protein SlmA is a direct transcriptional activator of chitobiose utilization in Vibrio cholerae. PLoS Genet. 2017 Jul 6;13(7):e1006877. doi: 10.1371/journal.pgen.1006877. eCollection 2017 Jul. |
2017 Jul | degradation | 11 | 2 | GH94, GH20, GH9 |
| PUL0042 | RT-PCR | sucrose | Caulobacter vibrioides | 30054816 SucA-dependent uptake of sucrose across the outer membrane of Caulobacter crescentus. J Microbiol. 2018 Sep;56(9):648-655. doi: 10.1007/s12275-018-8225-x. Epub 2018 Jul 27. |
2018 Sep | degradation | 4 | 1 | GH13_4 |
| PUL0081 | qRT-PCR, microarray | oligogalacturonide | Vibrio parahaemolyticus | 31133029 Carbohydrate metabolic systems present on genomic islands are lost and gained in Vibrio parahaemolyticus. BMC Microbiol. 2019 May 27;19(1):112. doi: 10.1186/s12866-019-1487-6. |
2019 May 27 | degradation | 13 | 2 | PL9_1, PL22_1, PL22 |
| PUL0175 | enzyme activity assay | galactomannan | Cellvibrio mixtus | 16842369 Galactomannan hydrolysis and mannose metabolism in Cellvibrio mixtus. FEMS Microbiol Lett. 2006 Aug;261(1):123-32. doi: 10.1111/j.1574-6968.2006.00342.x. |
2006 Aug | degradation | 4 | 3 | GH130, GH5_7, GH5, GH27 |
| PUL0215 | qPCR, enzyme activity assay | xyloglucan | Cellvibrio japonicus | 25171165 A complex gene locus enables xyloglucan utilization in the model saprophyte Cellvibrio japonicus. Mol Microbiol. 2014 Oct;94(2):418-33. doi: 10.1111/mmi.12776. Epub 2014 Sep 17. |
2014 Oct | degradation | 4 | 3 | GH31, GH35, GH95 |
| PUL0247 | primer extension analysis, gene deletion mutant and growth assay | capsule polysaccharide | Vibrio vulnificus | 24102883, 16484211 Role of capsular polysaccharide (CPS) in biofilm formation and regulation of CPS production by quorum-sensing in Vibrio vulnificus. Genetic variation in the Vibrio vulnificus group 1 capsular polysaccharide operon. Mol Microbiol. 2013 Nov;90(4):841-57. doi: 10.1111/mmi.12401. Epub 2013 Oct 10. J Bacteriol. 2006 Mar;188(5):1987-98. doi: 10.1128/JB.188.5.1987-1998.2006. |
2013 Nov,2006 Mar | degradation | 18 | 4 | GT4, GT4 |
| PUL0248 | sequence homology analysis | capsule polysaccharide | Vibrio vulnificus | 24102883 Role of capsular polysaccharide (CPS) in biofilm formation and regulation of CPS production by quorum-sensing in Vibrio vulnificus. Mol Microbiol. 2013 Nov;90(4):841-57. doi: 10.1111/mmi.12401. Epub 2013 Oct 10. |
2013 Nov | degradation | 19 | 1 | PL12_3, PL0 |
| PUL0250 | sequence homology analysis | capsule polysaccharide | Vibrio vulnificus | 24102883 Role of capsular polysaccharide (CPS) in biofilm formation and regulation of CPS production by quorum-sensing in Vibrio vulnificus. Mol Microbiol. 2013 Nov;90(4):841-57. doi: 10.1111/mmi.12401. Epub 2013 Oct 10. |
2013 Nov | degradation | 30 | 1 | GT4, GT4, PL12, PL0, GT4 |
| PUL0331 | carbon utilization assay | cellobiose | Aliivibrio fischeri | 18487409 Identification of a cellobiose utilization gene cluster with cryptic beta-galactosidase activity in Vibrio fischeri. Appl Environ Microbiol. 2008 Jul;74(13):4059-69. doi: 10.1128/AEM.00190-08. Epub 2008 May 16. |
2008 Jul | degradation | 6 | 1 | GH1 |
| PUL0381 | microarray, gene deletion mutant and growth assay | chitin | Vibrio cholerae | 14983042 The Vibrio cholerae chitin utilization program. Proc Natl Acad Sci U S A. 2004 Feb 24;101(8):2524-9. doi: 10.1073/pnas.0308707101. |
2004 Feb 24 | degradation | 6 | 1 | CBM12, CE4, GH4 |
| PUL0579 | microarray, qRT-PCR, Western Blot, immunoprecipitation | N-acetylglucosamine | Vibrio cholerae | 21488982 Two gene clusters co-ordinate for a functional N-acetylglucosamine catabolic pathway in Vibrio cholerae. Mol Microbiol. 2011 Jun;80(6):1549-60. doi: 10.1111/j.1365-2958.2011.07664.x. Epub 2011 May 5. |
2011 Jun | degradation | 3 | 1 | CE9 |
| PUL0580 | microarray, qRT-PCR, Western Blot, immunoprecipitation | N-acetylglucosamine | Vibrio cholerae | 21488982 Two gene clusters co-ordinate for a functional N-acetylglucosamine catabolic pathway in Vibrio cholerae. Mol Microbiol. 2011 Jun;80(6):1549-60. doi: 10.1111/j.1365-2958.2011.07664.x. Epub 2011 May 5. |
2011 Jun | degradation | 3 | 1 | CE9 |
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