PUL ID

PUL0247

PubMed

24102883, Mol Microbiol. 2013 Nov;90(4):841-57. doi: 10.1111/mmi.12401. Epub 2013 Oct 10.
16484211, J Bacteriol. 2006 Mar;188(5):1987-98. doi: 10.1128/JB.188.5.1987-1998.2006.

Characterization method

primer extension analysis,gene deletion mutant and growth assay

Genomic accession number

DQ360502.1

Nucelotide position range

833-22043

Substrate

capsule polysaccharide

Loci

AAL09161.2-ABD38633.1

Species

Vibrio vulnificus/672

Degradation or Biosynthesis

degradation

Gene Name

Locus Tag

Protein ID

Gene Position

GenBank Contig Range

EC Number

wza - AAL09161.2 833 - 2066 (+) DQ360502.1:1666-2899 -
hp1 - ABD38617.1 2147 - 2507 (+) DQ360502.1:2980-3340 -
wzb - ABD38618.1 2776 - 3217 (+) DQ360502.1:3609-4050 -
wzc - ABD38619.1 3379 - 5563 (+) DQ360502.1:4212-6396 -
wecC - ABD38620.1 5692 - 6973 (+) DQ360502.1:6525-7806 -
wbpP - ABD38621.1 7064 - 8096 (+) DQ360502.1:7897-8929 -
wzx - ABD38622.1 8082 - 9366 (+) DQ360502.1:8915-10199 -
hp3 - ABD38623.1 9429 - 10674 (+) DQ360502.1:10262-11507 -
hp4 - ABD38624.1 10675 - 11863 (+) DQ360502.1:11508-12696 -
rfaG - ABD38625.1 11859 - 12963 (+) DQ360502.1:12692-13796 -
wbjB - ABD38626.1 12964 - 14002 (+) DQ360502.1:13797-14835 -
rmlD - ABD38627.1 14003 - 14876 (+) DQ360502.1:14836-15709 -
wbjD - ABD38628.1 14872 - 16003 (+) DQ360502.1:15705-16836 -
wbuB - ABD38629.1 16062 - 17211 (+) DQ360502.1:16895-18044 -
wbfT - ABD38630.1 17210 - 18173 (+) DQ360502.1:18043-19006 -
wbfU - ABD38631.1 18169 - 18724 (+) DQ360502.1:19002-19557 -
wbfY - ABD38632.1 18748 - 20701 (+) DQ360502.1:19581-21534 -
wbfV - ABD38633.1 20876 - 22043 (+) DQ360502.1:21709-22876 -

Cluster number

1

Gene name

Gene position

Gene type

Found by CGCFinder?

- 834 - 2066 (+) TC: gnl|TC-DB|P0A932|1.B.18.3.8 Yes
- 2148 - 2507 (+) other Yes
- 2777 - 3217 (+) other Yes
- 3380 - 5563 (+) TC: gnl|TC-DB|P76387|8.A.3.3.2 Yes
- 5693 - 6973 (+) other Yes
- 7065 - 8096 (+) other Yes
- 8083 - 9366 (+) other Yes
- 9430 - 10674 (+) other Yes
- 10676 - 11863 (+) other Yes
- 11860 - 12963 (+) CAZyme: GT4 Yes
- 12965 - 14002 (+) TC: gnl|TC-DB|Q6MMD5|9.B.18.2.1 Yes
- 14004 - 14876 (+) other Yes
- 14873 - 16003 (+) other Yes
- 16063 - 17211 (+) CAZyme: GT4 Yes
- 17211 - 18173 (+) other Yes
- 18170 - 18724 (+) TC: gnl|TC-DB|917585193|9.B.18.1.3 Yes
- 18749 - 20701 (+) TC: gnl|TC-DB|Q6MMD5|9.B.18.2.1 Yes
- 20877 - 22043 (+) CDS No

PUL ID

PUL0247

PubMed

24102883, Mol Microbiol. 2013 Nov;90(4):841-57. doi: 10.1111/mmi.12401. Epub 2013 Oct 10.

Title

Role of capsular polysaccharide (CPS) in biofilm formation and regulation of CPS production by quorum-sensing in Vibrio vulnificus.

Author

Lee KJ, Kim JA, Hwang W, Park SJ, Lee KH

Abstract

Extracellular polysaccharides, such as lipopolysaccharide and loosely associated exopolysaccharides, are essential for Vibrio vulnificus to form biofilms. The role of another major component of the V. vulnificus extracellular matrix, capsular polysaccharide (CPS), which contributes to colony opacity, has been characterized in biofilm formation. A CPS-deficient mutant, whose wbpP gene encoding UDP-GlcNAc C4-epimerase was knocked out, formed significantly more biofilm than wild type, due to increased hydrophobicity of the cell surface, adherence to abiotic surfaces and cell aggregation. To elucidate the direct effect of CPS on biofilm structure, extracted CPS and a CPS-degrading enzyme, alpha-N-acetylgalactosaminidase, were added in biofilm assays, resulting in reduction and increment of biofilm sizes respectively. Therefore, it is suggested that CPS play a critical role in determining biofilm size by restricting continual growth of mature biofilms. Since CPS is required after maturation, CPS biosynthesis should be controlled in a cell density-dependent manner, e.g. by quorum-sensing (QS) regulation. Analysing transcription of the CPS gene cluster revealed that it was activated by SmcR, a QS master regulator, via binding to the upstream region of the cluster. Therefore, CPS was produced when biofilm cell density reached high enough to turn on QS regulation and limited biofilms to appropriate sizes.

PubMed

16484211, J Bacteriol. 2006 Mar;188(5):1987-98. doi: 10.1128/JB.188.5.1987-1998.2006.

Title

Genetic variation in the Vibrio vulnificus group 1 capsular polysaccharide operon.

Author

Chatzidaki-Livanis M, Jones MK, Wright AC

Abstract

Vibrio vulnificus produces human disease associated with raw-oyster consumption or wound infections, but fatalities are limited to persons with chronic underlying illness. Capsular polysaccharide (CPS) is required for virulence, and CPS expression correlates with opaque (Op) colonies that show "phase variation" to avirulent translucent (Tr) phenotypes with reduced CPS. The results discussed here confirmed homology of a V. vulnificus CPS locus to the group 1 CPS operon in Escherichia coli. However, two distinct V. vulnificus genotypes or alleles were associated with the operon, and they diverged at sequences encoding hypothetical proteins and also at unique, intergenic repetitive DNA elements. Phase variation was examined under conditions that promoted high-frequency transition of Op to Tr forms. Recovery of Tr isolates in these experiments showed multiple genotypes, which were designated TR1, TR2, and TR3: CPS operons of TR1 isolates were identical to the Op parent, and cells remained phase variable but expressed reduced CPS. TR2 and TR3 showed deletion mutations in one (wzb) or multiple genes, respectively, and deletion mutants were acapsular and locked in the Tr phase. Complementation in trans restored the Op phenotype in strains with the wzb deletion mutation. Allelic variation in repetitive elements determined the locations, rates, and extents of deletion mutations. Thus, different mechanisms are responsible for reversible phase variation in CPS expression versus genetic deletions in the CPS operon of V. vulnificus. Repetitive-element-mediated deletion mutations were highly conserved within the species and are likely to promote survival in estuarine environments.