| PULID | Characterization Method(s) | Substrate | Organism | Publication | Publish Date | Type | Num Genes | Num CAZymes | CazyFamily |
|---|---|---|---|---|---|---|---|---|---|
| PUL0025 | sugar utilization assay, NMR, sequence homology analysis | capsule polysaccharide | Acinetobacter baumannii | 32093600 Elucidation of the K32 Capsular Polysaccharide Structure and Characterization of the KL32 Gene Cluster of Acinetobacter baumannii LUH5549. Biochemistry (Mosc). 2020 Feb;85(2):241-247. doi: 10.1134/S000629792002011X. |
2020 Feb | biosynthesis | 18 | 4 | GT2, GT4, GT0, GT2 |
| PUL0036 | Southern Blot, transposon mutagenesis | emulsan | Acinetobacter venetianus | 11429470 Analysis of the wee gene cluster responsible for the biosynthesis of the polymeric bioemulsifier from the oil-degrading strain Acinetobacter lwoffii RAG-1. Microbiology (Reading). 2001 Jul;147(Pt 7):1937-1946. doi: 10.1099/00221287-147-7-1937. |
2001 Jul | biosynthesis | 22 | 3 | PL12, PL0, GT4 |
| PUL0043 | Smith degradation, sequence homology analysis | capsule polysaccharide | Acinetobacter baumannii | 29886169 Structure and gene cluster of the K125 capsular polysaccharide from Acinetobacter baumannii MAR13-1452. Int J Biol Macromol. 2018 Oct 1;117:1195-1199. doi: 10.1016/j.ijbiomac.2018.06.029. Epub 2018 Jun 7. |
2018 Oct 1 | biosynthesis | 23 | 3 | GT4 |
| PUL0047 | sugar utilization assay, NMR, sequence homology analysis | O-antigen | Escherichia albertii | 31622726 Escherichia albertii EA046 (O9) harbors two polysaccharide gene clusters for synthesis of the O-antigen by the Wzx/Wzy-dependent pathway and a mannan shared by Escherichia coli O8 by the Wzm/Wzt-dependent pathway. Int J Biol Macromol. 2020 Jan 1;142:609-614. doi: 10.1016/j.ijbiomac.2019.09.135. Epub 2019 Oct 14. |
2020 Jan 1 | biosynthesis | 25 | 8 | GT4, GT4 |
| PUL0057 | NMR, sequence homology analysis | O-antigen | Escherichia coli | 29787897 Structural and genetic relatedness of the O-antigens of Escherichia coli O50 and O2. Carbohydr Res. 2018 Jul 15;464:8-11. doi: 10.1016/j.carres.2018.05.001. Epub 2018 May 7. |
2018 Jul 15 | biosynthesis | 13 | 5 | GT4, GT4 |
| PUL0060 | NMR, sequence homology analysis | capsule polysaccharide | Acinetobacter baumannii | 31421354 Acinetobacter baumannii K116 capsular polysaccharide structure is a hybrid of the K14 and revised K37 structures. Carbohydr Res. 2019 Oct 1;484:107774. doi: 10.1016/j.carres.2019.107774. Epub 2019 Aug 8. |
2019 Oct 1 | biosynthesis | 24 | 4 | GT2, GT2, GT4, GT2 |
| PUL0061 | NMR, sequence homology analysis | capsule polysaccharide | Acinetobacter baumannii | 31421354 Acinetobacter baumannii K116 capsular polysaccharide structure is a hybrid of the K14 and revised K37 structures. Carbohydr Res. 2019 Oct 1;484:107774. doi: 10.1016/j.carres.2019.107774. Epub 2019 Aug 8. |
2019 Oct 1 | biosynthesis | 35 | 4 | GT2, GT2, GT4, GT2, GT4, CE4 |
| PUL0062 | NMR, sequence homology analysis | capsule polysaccharide | Acinetobacter baumannii | 31421354 Acinetobacter baumannii K116 capsular polysaccharide structure is a hybrid of the K14 and revised K37 structures. Carbohydr Res. 2019 Oct 1;484:107774. doi: 10.1016/j.carres.2019.107774. Epub 2019 Aug 8. |
2019 Oct 1 | biosynthesis | 19 | 4 | GT2, GT2, GT4, GT2 |
| PUL0070 | sugar utilization assay, NMR, sequence homology analysis | capsule polysaccharide | Acinetobacter baumannii | 30664967 Production of the K16 capsular polysaccharide by Acinetobacter baumannii ST25 isolate D4 involves a novel glycosyltransferase encoded in the KL16 gene cluster. Int J Biol Macromol. 2019 May 1;128:101-106. doi: 10.1016/j.ijbiomac.2019.01.080. Epub 2019 Jan 18. |
2019 May 1 | biosynthesis | 36 | 3 | GT52, GT0, GT14, GT2, GT25, GT4, CE4 |
| PUL0071 | sugar utilization assay, NMR, sequence homology analysis | capsule polysaccharide | Acinetobacter baumannii | 30664967 Production of the K16 capsular polysaccharide by Acinetobacter baumannii ST25 isolate D4 involves a novel glycosyltransferase encoded in the KL16 gene cluster. Int J Biol Macromol. 2019 May 1;128:101-106. doi: 10.1016/j.ijbiomac.2019.01.080. Epub 2019 Jan 18. |
2019 May 1 | biosynthesis | 38 | 4 | GT0, GT14, GT2, GT25, GT4, CE4 |
| PUL0074 | sequence homology analysis | capsule polysaccharide | Acinetobacter baumannii | 31396168 Identification of Potential Virulence Factors in the Model Strain Acinetobacter baumannii A118. Front Microbiol. 2019 Jul 23;10:1599. doi: 10.3389/fmicb.2019.01599. eCollection 2019. |
2019 | biosynthesis | 36 | 5 | GT2, GT4 |
| PUL0075 | sequence homology analysis | capsule polysaccharide | Acinetobacter baumannii | 31396168 Identification of Potential Virulence Factors in the Model Strain Acinetobacter baumannii A118. Front Microbiol. 2019 Jul 23;10:1599. doi: 10.3389/fmicb.2019.01599. eCollection 2019. |
2019 | biosynthesis | 25 | 5 | GT2, GT4, GT2 |
| PUL0076 | sequence homology analysis | capsule polysaccharide, outer core capsule polysaccharide | Acinetobacter baumannii | 31396168 Identification of Potential Virulence Factors in the Model Strain Acinetobacter baumannii A118. Front Microbiol. 2019 Jul 23;10:1599. doi: 10.3389/fmicb.2019.01599. eCollection 2019. |
2019 | biosynthesis | 7 | 7 | GT4, CE4 |
| PUL0077 | sequence homology analysis | capsule polysaccharide, outer core capsule polysaccharide | Acinetobacter baumannii | 31396168 Identification of Potential Virulence Factors in the Model Strain Acinetobacter baumannii A118. Front Microbiol. 2019 Jul 23;10:1599. doi: 10.3389/fmicb.2019.01599. eCollection 2019. |
2019 | biosynthesis | 11 | 7 | GT4, CE4 |
| PUL0079 | sequence homology analysis | capsule polysaccharide, outer core capsule polysaccharide | Acinetobacter baumannii | 31396168 Identification of Potential Virulence Factors in the Model Strain Acinetobacter baumannii A118. Front Microbiol. 2019 Jul 23;10:1599. doi: 10.3389/fmicb.2019.01599. eCollection 2019. |
2019 | biosynthesis | 16 | 6 | CE4, GT4, GT2 |
| PUL0080 | sequence homology analysis | capsule polysaccharide, outer core capsule polysaccharide | Acinetobacter baumannii | 31396168 Identification of Potential Virulence Factors in the Model Strain Acinetobacter baumannii A118. Front Microbiol. 2019 Jul 23;10:1599. doi: 10.3389/fmicb.2019.01599. eCollection 2019. |
2019 | biosynthesis | 12 | 6 | CE4, GT4, GT2 |
| PUL0090 | sequence homology analysis, sugar utilization assay, NMR | O-antigen | Escherichia coli | 31220629 Structure elucidation and gene cluster characterization of the O-antigen of Yersinia kristensenii capital ES, Cyrillic-134. Carbohydr Res. 2019 Jul 15;481:9-15. doi: 10.1016/j.carres.2019.06.001. Epub 2019 Jun 6. |
2019 Jul 15 | biosynthesis | 12 | 4 | GT4, GT4, GT4 |
| PUL0130 | NMR, mass spectrometry | O-antigen | Yersinia rohdei | 30385338 Structure and gene cluster of the O-polysaccharide of Yersinia rohdei H274-36/78. Int J Biol Macromol. 2019 Feb 1;122:555-561. doi: 10.1016/j.ijbiomac.2018.10.189. Epub 2018 Oct 29. |
2019 Feb 1 | biosynthesis | 11 | 3 | GT4, GT4 |
| PUL0131 | sequence homology analysis | O-antigen | Acidiphilium rubrum | 30385338 Structure and gene cluster of the O-polysaccharide of Yersinia rohdei H274-36/78. Int J Biol Macromol. 2019 Feb 1;122:555-561. doi: 10.1016/j.ijbiomac.2018.10.189. Epub 2018 Oct 29. |
2019 Feb 1 | biosynthesis | 12 | 3 | GT4, GT4, GT4 |
| PUL0173 | sequence homology analysis, NMR, sugar utilization assay | O-antigen | Escherichia coli | 27177202 Structure and gene cluster of the O-antigen of Escherichia coli O156 containing a pyruvic acid acetal. Carbohydr Res. 2016 Jul 22;430:24-28. doi: 10.1016/j.carres.2016.04.025. Epub 2016 Apr 29. |
2016 Jul 22 | biosynthesis | 20 | 4 | GT4, GT4, GT2 |
| PUL0177 | NMR, sugar utilization assay | O-antigen | Escherichia coli | 27293097 Structure and Biosynthesis Gene Cluster of the O-Antigen of Escherichia coli O12. Biochemistry (Mosc). 2016 Apr;81(4):401-6. doi: 10.1134/S0006297916040106. |
2016 Apr | biosynthesis | 15 | 4 | GT4 |
| PUL0181 | NMR, sugar utilization assay | O-antigen | Escherichia coli | 27083849 Structure of the beta-l-fucopyranosyl phosphate-containing O-specific polysaccharide of Escherichia coli O84. Int J Biol Macromol. 2016 Jul;88:578-85. doi: 10.1016/j.ijbiomac.2016.04.025. Epub 2016 Apr 13. |
2016 Jul | biosynthesis | 19 | 5 | GT4, GT2 |
| PUL0184 | NMR, sugar utilization assay | O-antigen | Escherichia coli | 27058293 Structures and genetics of biosynthesis of glycerol 1-phosphate-containing O-polysaccharides of Escherichia coli O28ab, O37, and O100. Carbohydr Res. 2016 May 13;426:26-32. doi: 10.1016/j.carres.2016.03.011. Epub 2016 Mar 29. |
2016 May 13 | biosynthesis | 20 | 3 | GT4 |
| PUL0202 | NMR, sugar utilization assay | O-antigen | Escherichia coli | 26342864 Structure and gene cluster of the O-antigen of Escherichia coli O43. Carbohydr Res. 2015 Oct 30;416:32-6. doi: 10.1016/j.carres.2015.08.008. Epub 2015 Aug 18. |
2015 Oct 30 | biosynthesis | 19 | 4 | GT4, GT2 |
| PUL0226 | Western Blot | xanthan | Xanthomonas campestris | 23089617 Xanthan chain length is modulated by increasing the availability of the polysaccharide copolymerase protein GumC and the outer membrane polysaccharide export protein GumB. Glycobiology. 2013 Feb;23(2):259-72. doi: 10.1093/glycob/cws146. Epub 2012 Oct 22. |
2013 Feb | biosynthesis | 13 | 4 | GT4, GT94, GT70, GT26 |
| PUL0247 | primer extension analysis, gene deletion mutant and growth assay | capsule polysaccharide | Vibrio vulnificus | 24102883, 16484211 Role of capsular polysaccharide (CPS) in biofilm formation and regulation of CPS production by quorum-sensing in Vibrio vulnificus. Genetic variation in the Vibrio vulnificus group 1 capsular polysaccharide operon. Mol Microbiol. 2013 Nov;90(4):841-57. doi: 10.1111/mmi.12401. Epub 2013 Oct 10. J Bacteriol. 2006 Mar;188(5):1987-98. doi: 10.1128/JB.188.5.1987-1998.2006. |
2013 Nov,2006 Mar | degradation | 18 | 4 | GT4, GT4 |
| PUL0250 | sequence homology analysis | capsule polysaccharide | Vibrio vulnificus | 24102883 Role of capsular polysaccharide (CPS) in biofilm formation and regulation of CPS production by quorum-sensing in Vibrio vulnificus. Mol Microbiol. 2013 Nov;90(4):841-57. doi: 10.1111/mmi.12401. Epub 2013 Oct 10. |
2013 Nov | degradation | 30 | 1 | GT4, GT4, PL12, PL0, GT4 |
| PUL0253 | gene chips | capsule polysaccharide | Bacteroides thetaiotaomicron | 23996813 Regulated expression of polysaccharide utilization and capsular biosynthesis loci in biofilm and planktonic Bacteroides thetaiotaomicron during growth in chemostats. Biotechnol Bioeng. 2014 Jan;111(1):165-73. doi: 10.1002/bit.24994. Epub 2013 Jul 30. |
2014 Jan | degradation | 32 | 13 | GT2, GT2, GT101, GT0, GT2, GT2, GT4, GT4, GH27 |
| PUL0254 | gene chips | capsule polysaccharide | Bacteroides thetaiotaomicron | 23996813 Regulated expression of polysaccharide utilization and capsular biosynthesis loci in biofilm and planktonic Bacteroides thetaiotaomicron during growth in chemostats. Biotechnol Bioeng. 2014 Jan;111(1):165-73. doi: 10.1002/bit.24994. Epub 2013 Jul 30. |
2014 Jan | degradation | 28 | 2 | GT4, GT4 |
| PUL0256 | gene chips | capsule polysaccharide | Bacteroides thetaiotaomicron | 23996813 Regulated expression of polysaccharide utilization and capsular biosynthesis loci in biofilm and planktonic Bacteroides thetaiotaomicron during growth in chemostats. Biotechnol Bioeng. 2014 Jan;111(1):165-73. doi: 10.1002/bit.24994. Epub 2013 Jul 30. |
2014 Jan | degradation | 19 | 2 | GT4, GT4, GT94 |
| PUL0257 | gene chips | capsule polysaccharide | Bacteroides thetaiotaomicron | 23996813 Regulated expression of polysaccharide utilization and capsular biosynthesis loci in biofilm and planktonic Bacteroides thetaiotaomicron during growth in chemostats. Biotechnol Bioeng. 2014 Jan;111(1):165-73. doi: 10.1002/bit.24994. Epub 2013 Jul 30. |
2014 Jan | degradation | 15 | 5 | GT4, GT2, GT4, GT2 |
| PUL0259 | comparative genomics | exopolysaccharide | Nitrosospira multiformis | 18390676 Complete genome sequence of Nitrosospira multiformis, an ammonia-oxidizing bacterium from the soil environment. Appl Environ Microbiol. 2008 Jun;74(11):3559-72. doi: 10.1128/AEM.02722-07. Epub 2008 Apr 4. |
2008 Jun | biosynthesis | 24 | 2 | GT4, PL15, GT4 |
| PUL0260 | gene chips | capsule polysaccharide | Bacteroides thetaiotaomicron | 23996813 Regulated expression of polysaccharide utilization and capsular biosynthesis loci in biofilm and planktonic Bacteroides thetaiotaomicron during growth in chemostats. Biotechnol Bioeng. 2014 Jan;111(1):165-73. doi: 10.1002/bit.24994. Epub 2013 Jul 30. |
2014 Jan | degradation | 14 | 1 | GT4 |
| PUL0261 | gene chips | capsule polysaccharide | Bacteroides thetaiotaomicron | 23996813 Regulated expression of polysaccharide utilization and capsular biosynthesis loci in biofilm and planktonic Bacteroides thetaiotaomicron during growth in chemostats. Biotechnol Bioeng. 2014 Jan;111(1):165-73. doi: 10.1002/bit.24994. Epub 2013 Jul 30. |
2014 Jan | degradation | 17 | 10 | GT4, GT0, GT4, GT4, GT2, GT14, GT14, GT32, GT8, GT2, GT2 |
| PUL0270 | comparative genomics | exopolysaccharide, lipopolysaccharide | Nitrosospira multiformis | 18390676 Complete genome sequence of Nitrosospira multiformis, an ammonia-oxidizing bacterium from the soil environment. Appl Environ Microbiol. 2008 Jun;74(11):3559-72. doi: 10.1128/AEM.02722-07. Epub 2008 Apr 4. |
2008 Jun | biosynthesis | 15 | 3 | GT4, CE0, CE4 |
| PUL0280 | microarray, qRT-PCR | capsule polysaccharide | Streptococcus suis | 23226442 HP0197 contributes to CPS synthesis and the virulence of Streptococcus suis via CcpA. PLoS One. 2012;7(11):e50987. doi: 10.1371/journal.pone.0050987. Epub 2012 Nov 30. |
2012 | biosynthesis | 15 | 5 | GT4, GT4, GT2, GT2, GT2 |
| PUL0281 | comparative genomics | exopolysaccharide, lipopolysaccharide, capsule polysaccharide | Nitrosospira multiformis | 18390676 Complete genome sequence of Nitrosospira multiformis, an ammonia-oxidizing bacterium from the soil environment. Appl Environ Microbiol. 2008 Jun;74(11):3559-72. doi: 10.1128/AEM.02722-07. Epub 2008 Apr 4. |
2008 Jun | biosynthesis | 28 | 3 | GT2, GT4, GT4 |
| PUL0286 | NMR, mass spectrometry, sugar utilization assay | O-antigen | Providencia alcalifaciens | 23163869 Structural, serological, and genetic characterization of the O-antigen of Providencia alcalifaciens O40. FEMS Immunol Med Microbiol. 2012 Dec;66(3):382-92. doi: 10.1111/1574-695X.12002. |
2012 Dec | biosynthesis | 16 | 4 | GT2, GT4, GT2 |
| PUL0290 | NMR, mass spectrometry, sugar utilization assay | O-antigen | Yersinia intermedia | 29524727 Full structure and insight into the gene cluster of the O-specific polysaccharide of Yersinia intermedia H9-36/83 (O:17). Carbohydr Res. 2018 May 2;460:51-56. doi: 10.1016/j.carres.2018.02.014. Epub 2018 Feb 28. |
2018 May 2 | degradation | 12 | 4 | GT4, GT4 |
| PUL0314 | microarray | laminarin, alginate | Zobellia galactanivorans | 28983288 Gene Expression Analysis of Zobellia galactanivorans during the Degradation of Algal Polysaccharides Reveals both Substrate-Specific and Shared Transcriptome-Wide Responses. Front Microbiol. 2017 Sep 21;8:1808. doi: 10.3389/fmicb.2017.01808. eCollection 2017. |
2017 | degradation | 5 | 2 | GT2, GT4 |
| PUL0324 | RT-PCR, enzyme activity assay | capsule polysaccharide | Serratia marcescens | 28536292 Capsule Production and Glucose Metabolism Dictate Fitness during Serratia marcescens Bacteremia. mBio. 2017 May 23;8(3):e00740-17. doi: 10.1128/mBio.00740-17. |
2017 May 23 | biosynthesis | 17 | 2 | GT4, GT4 |
| PUL0350 | microarray | capsule polysaccharide | Bacteroides thetaiotaomicron | 16968696 Functional genomic and metabolic studies of the adaptations of a prominent adult human gut symbiont, Bacteroides thetaiotaomicron, to the suckling period. J Biol Chem. 2006 Nov 24;281(47):36269-79. doi: 10.1074/jbc.M606509200. Epub 2006 Sep 12. |
2006 Nov 24 | biosynthesis | 21 | 3 | GT4, GT2, GT4, GT2 |
| PUL0388 | sugar utilization assay, NMR | O-antigen | Salmonella enterica | 20501518 Structural and genetic characterization of the closely related O-antigens of Escherichia coli O85 and Salmonella enterica O17. Innate Immun. 2011 Apr;17(2):164-73. doi: 10.1177/1753425910369270. Epub 2010 May 25. |
2011 Apr | biosynthesis | 9 | 4 | GT4, GT4, GT2 |
| PUL0389 | sugar utilization assay, NMR | O-antigen | Escherichia coli | 20501518 Structural and genetic characterization of the closely related O-antigens of Escherichia coli O85 and Salmonella enterica O17. Innate Immun. 2011 Apr;17(2):164-73. doi: 10.1177/1753425910369270. Epub 2010 May 25. |
2011 Apr | biosynthesis | 8 | 4 | GT4, GT4, GT2 |
| PUL0429 | sequence homology analysis | O-antigen, unknown polysaccharide | Sinorhizobium meliloti | 21396969 The complete genome sequence of the dominant Sinorhizobium meliloti field isolate SM11 extends the S. meliloti pan-genome. J Biotechnol. 2011 Aug 20;155(1):20-33. doi: 10.1016/j.jbiotec.2010.12.018. Epub 2011 Mar 17. |
2011 Aug 20 | biosynthesis | 42 | 4 | GT2, GT2, GT4, GT2 |
| PUL0430 | RT-PCR, microarray, differential gene expression | O-antigen, exopolysaccharide | Clavibacter michiganensis | 22326627 Analysis of the interaction of Clavibacter michiganensis subsp. michiganensis with its host plant tomato by genome-wide expression profiling. J Biotechnol. 2012 Jul 31;160(1-2):42-54. doi: 10.1016/j.jbiotec.2012.01.023. Epub 2012 Feb 1. |
2012 Jul 31 | biosynthesis | 13 | 2 | GT4, GT4, GT94 |
| PUL0432 | sequence homology analysis, sugar utilization assay, NMR | O-antigen | Escherichia coli | 27645300 Structures and gene clusters of the O-specific polysaccharides of the lipopolysaccharides of Escherichia coli O69 and O146 containing glycolactilic acids: ether conjugates of D-GlcNAc and D-Glc with (R)- and (S)-lactic acid. Glycoconj J. 2017 Feb;34(1):71-84. doi: 10.1007/s10719-016-9730-y. Epub 2016 Sep 19. |
2017 Feb | biosynthesis | 11 | 3 | GT4, GT2 |
| PUL0446 | sequence homology analysis, sugar utilization assay, NMR | O-antigen | Escherichia albertii | 28494314 Structure and gene cluster of the O-antigen of Escherichia albertii O1 resembling the O-antigen of Pseudomonas aeruginosa O5. Carbohydr Res. 2017 Jun 29;446-447:28-31. doi: 10.1016/j.carres.2017.04.024. Epub 2017 May 2. |
2017 Jun 29 | biosynthesis | 17 | 2 | GT4 |
| PUL0447 | sequence homology analysis, sugar utilization assay, NMR | O-antigen | Escherichia albertii | 28672166 Structures and gene clusters of the O-antigens of Escherichia albertii O3, O4, O6, and O7. Carbohydr Res. 2017 Sep 8;449:17-22. doi: 10.1016/j.carres.2017.06.008. Epub 2017 Jun 17. |
2017 Sep 8 | biosynthesis | 14 | 4 | GT4, GT4 |
| PUL0448 | sequence homology analysis, sugar utilization assay, NMR | O-antigen | Escherichia albertii | 28672166 Structures and gene clusters of the O-antigens of Escherichia albertii O3, O4, O6, and O7. Carbohydr Res. 2017 Sep 8;449:17-22. doi: 10.1016/j.carres.2017.06.008. Epub 2017 Jun 17. |
2017 Sep 8 | biosynthesis | 19 | 4 | GT4 |
| PUL0449 | sequence homology analysis, sugar utilization assay, NMR | O-antigen | Escherichia albertii | 28672166 Structures and gene clusters of the O-antigens of Escherichia albertii O3, O4, O6, and O7. Carbohydr Res. 2017 Sep 8;449:17-22. doi: 10.1016/j.carres.2017.06.008. Epub 2017 Jun 17. |
2017 Sep 8 | biosynthesis | 13 | 4 | GT4, GT2, GT4 |
| PUL0451 | sequence homology analysis, sugar utilization assay, NMR, gas chromatography and mass spectrometry | O-antigen | Streptococcus pneumoniae | 28837839 Genetic and structural elucidation of capsular polysaccharides from Streptococcus pneumoniae serotype 23A and 23B, and comparison to serotype 23F. Carbohydr Res. 2017 Oct 10;450:19-29. doi: 10.1016/j.carres.2017.08.006. Epub 2017 Aug 18. |
2017 Oct 10 | biosynthesis | 18 | 5 | GT4 |
| PUL0452 | sequence homology analysis, sugar utilization assay, NMR, gas chromatography and mass spectrometry | O-antigen | Streptococcus pneumoniae | 28837839 Genetic and structural elucidation of capsular polysaccharides from Streptococcus pneumoniae serotype 23A and 23B, and comparison to serotype 23F. Carbohydr Res. 2017 Oct 10;450:19-29. doi: 10.1016/j.carres.2017.08.006. Epub 2017 Aug 18. |
2017 Oct 10 | biosynthesis | 18 | 5 | GT4, GT2 |
| PUL0453 | sequence homology analysis, sugar utilization assay, NMR, gas chromatography and mass spectrometry | O-antigen | Streptococcus pneumoniae | 28837839 Genetic and structural elucidation of capsular polysaccharides from Streptococcus pneumoniae serotype 23A and 23B, and comparison to serotype 23F. Carbohydr Res. 2017 Oct 10;450:19-29. doi: 10.1016/j.carres.2017.08.006. Epub 2017 Aug 18. |
2017 Oct 10 | biosynthesis | 18 | 5 | GT4 |
| PUL0461 | sequence homology analysis, sugar utilization assay, NMR | O-antigen | Yersinia kristensenii | 31220629 Structure elucidation and gene cluster characterization of the O-antigen of Yersinia kristensenii capital ES, Cyrillic-134. Carbohydr Res. 2019 Jul 15;481:9-15. doi: 10.1016/j.carres.2019.06.001. Epub 2019 Jun 6. |
2019 Jul 15 | biosynthesis | 12 | 4 | GT4, GT4, GT4 |
| PUL0462 | sequence homology analysis, sugar utilization assay, NMR | O-antigen | Escherichia coli | 24607538 Structure elucidation and gene cluster annotation of the O-antigen of Escherichia coli O39; application of anhydrous trifluoroacetic acid for selective cleavage of glycosidic linkages. Carbohydr Res. 2014 Mar 31;388:30-6. doi: 10.1016/j.carres.2014.02.013. Epub 2014 Feb 18. |
2014 Mar 31 | biosynthesis | 14 | 4 | GT0, GT4, GT2 |
| PUL0489 | sequence homology analysis, microscopy | capsule polysaccharide | Bacteroides fragilis | 20829291 Twenty-eight divergent polysaccharide loci specifying within- and amongst-strain capsule diversity in three strains of Bacteroides fragilis. Microbiology (Reading). 2010 Nov;156(Pt 11):3255-3269. doi: 10.1099/mic.0.042978-0. Epub 2010 Sep 9. |
2010 Nov | biosynthesis | 21 | 2 | GT4 |
| PUL0493 | sequence homology analysis, microscopy | capsule polysaccharide | Bacteroides fragilis | 20829291 Twenty-eight divergent polysaccharide loci specifying within- and amongst-strain capsule diversity in three strains of Bacteroides fragilis. Microbiology (Reading). 2010 Nov;156(Pt 11):3255-3269. doi: 10.1099/mic.0.042978-0. Epub 2010 Sep 9. |
2010 Nov | biosynthesis | 14 | 5 | GT2, GT4, GT4, GT0, GT10, GT2 |
| PUL0494 | sequence homology analysis, microscopy | capsule polysaccharide | Bacteroides fragilis | 20829291 Twenty-eight divergent polysaccharide loci specifying within- and amongst-strain capsule diversity in three strains of Bacteroides fragilis. Microbiology (Reading). 2010 Nov;156(Pt 11):3255-3269. doi: 10.1099/mic.0.042978-0. Epub 2010 Sep 9. |
2010 Nov | biosynthesis | 23 | 3 | GT4, GT4, GT4 |
| PUL0495 | sequence homology analysis, microscopy | capsule polysaccharide | Bacteroides fragilis | 20829291 Twenty-eight divergent polysaccharide loci specifying within- and amongst-strain capsule diversity in three strains of Bacteroides fragilis. Microbiology (Reading). 2010 Nov;156(Pt 11):3255-3269. doi: 10.1099/mic.0.042978-0. Epub 2010 Sep 9. |
2010 Nov | biosynthesis | 22 | 4 | GT2, GT2, GT4, GT94, GT2 |
| PUL0498 | sequence homology analysis, microscopy | capsule polysaccharide | Bacteroides fragilis | 20829291 Twenty-eight divergent polysaccharide loci specifying within- and amongst-strain capsule diversity in three strains of Bacteroides fragilis. Microbiology (Reading). 2010 Nov;156(Pt 11):3255-3269. doi: 10.1099/mic.0.042978-0. Epub 2010 Sep 9. |
2010 Nov | biosynthesis | 25 | 8 | GT2, GT4, GT11, GT4, GT4, GT4, GT26 |
| PUL0499 | sequence homology analysis, microscopy | capsule polysaccharide | Bacteroides fragilis | 20829291 Twenty-eight divergent polysaccharide loci specifying within- and amongst-strain capsule diversity in three strains of Bacteroides fragilis. Microbiology (Reading). 2010 Nov;156(Pt 11):3255-3269. doi: 10.1099/mic.0.042978-0. Epub 2010 Sep 9. |
2010 Nov | biosynthesis | 14 | 7 | GT2, GT2, GT101, GT0, GT4, GT2, GT2, GT2 |
| PUL0500 | sequence homology analysis, microscopy | O-glycan | Bacteroides fragilis | 20829291 Twenty-eight divergent polysaccharide loci specifying within- and amongst-strain capsule diversity in three strains of Bacteroides fragilis. Microbiology (Reading). 2010 Nov;156(Pt 11):3255-3269. doi: 10.1099/mic.0.042978-0. Epub 2010 Sep 9. |
2010 Nov | biosynthesis | 9 | 4 | GT4, GT0, GT94, GT4, GT4, GT2 |
| PUL0501 | sequence homology analysis, microscopy | capsule polysaccharide | Bacteroides fragilis | 20829291 Twenty-eight divergent polysaccharide loci specifying within- and amongst-strain capsule diversity in three strains of Bacteroides fragilis. Microbiology (Reading). 2010 Nov;156(Pt 11):3255-3269. doi: 10.1099/mic.0.042978-0. Epub 2010 Sep 9. |
2010 Nov | biosynthesis | 9 | 3 | GT2, GT4 |
| PUL0502 | sequence homology analysis, microscopy | capsule polysaccharide | Bacteroides fragilis | 20829291 Twenty-eight divergent polysaccharide loci specifying within- and amongst-strain capsule diversity in three strains of Bacteroides fragilis. Microbiology (Reading). 2010 Nov;156(Pt 11):3255-3269. doi: 10.1099/mic.0.042978-0. Epub 2010 Sep 9. |
2010 Nov | biosynthesis | 20 | 5 | GT11, GT2, GT2, GT4 |
| PUL0503 | sequence homology analysis, microscopy | capsule polysaccharide | Bacteroides fragilis | 20829291 Twenty-eight divergent polysaccharide loci specifying within- and amongst-strain capsule diversity in three strains of Bacteroides fragilis. Microbiology (Reading). 2010 Nov;156(Pt 11):3255-3269. doi: 10.1099/mic.0.042978-0. Epub 2010 Sep 9. |
2010 Nov | biosynthesis | 16 | 6 | GT11, GT4, GT2, GT4, CE4, CE0, GT4, GT2 |
| PUL0505 | sequence homology analysis, microscopy | capsule polysaccharide | Bacteroides fragilis | 20829291 Twenty-eight divergent polysaccharide loci specifying within- and amongst-strain capsule diversity in three strains of Bacteroides fragilis. Microbiology (Reading). 2010 Nov;156(Pt 11):3255-3269. doi: 10.1099/mic.0.042978-0. Epub 2010 Sep 9. |
2010 Nov | biosynthesis | 14 | 5 | GT4, GT4, GT4, GT2, GT2 |
| PUL0509 | sequence homology analysis, microscopy | capsule polysaccharide | Bacteroides fragilis | 20829291 Twenty-eight divergent polysaccharide loci specifying within- and amongst-strain capsule diversity in three strains of Bacteroides fragilis. Microbiology (Reading). 2010 Nov;156(Pt 11):3255-3269. doi: 10.1099/mic.0.042978-0. Epub 2010 Sep 9. |
2010 Nov | biosynthesis | 14 | 6 | GT2, GT4, GT2, GT2, GT2, GT10 |
| PUL0510 | sequence homology analysis, microscopy | capsule polysaccharide | Bacteroides fragilis | 20829291 Twenty-eight divergent polysaccharide loci specifying within- and amongst-strain capsule diversity in three strains of Bacteroides fragilis. Microbiology (Reading). 2010 Nov;156(Pt 11):3255-3269. doi: 10.1099/mic.0.042978-0. Epub 2010 Sep 9. |
2010 Nov | biosynthesis | 27 | 7 | GT2, GT2, GT2, GT2, GT4, GT4, GT26 |
| PUL0511 | sequence homology analysis, microscopy | capsule polysaccharide | Bacteroides fragilis | 20829291 Twenty-eight divergent polysaccharide loci specifying within- and amongst-strain capsule diversity in three strains of Bacteroides fragilis. Microbiology (Reading). 2010 Nov;156(Pt 11):3255-3269. doi: 10.1099/mic.0.042978-0. Epub 2010 Sep 9. |
2010 Nov | biosynthesis | 14 | 6 | GT2, GT2, GT4, GT2, GT2 |
| PUL0512 | sequence homology analysis, microscopy | O-glycan | Bacteroides fragilis | 20829291 Twenty-eight divergent polysaccharide loci specifying within- and amongst-strain capsule diversity in three strains of Bacteroides fragilis. Microbiology (Reading). 2010 Nov;156(Pt 11):3255-3269. doi: 10.1099/mic.0.042978-0. Epub 2010 Sep 9. |
2010 Nov | biosynthesis | 10 | 4 | GT4, GT0, GT94, GT4, GT4, GT2 |
| PUL0514 | sequence homology analysis, microscopy | capsule polysaccharide | Bacteroides fragilis | 20829291 Twenty-eight divergent polysaccharide loci specifying within- and amongst-strain capsule diversity in three strains of Bacteroides fragilis. Microbiology (Reading). 2010 Nov;156(Pt 11):3255-3269. doi: 10.1099/mic.0.042978-0. Epub 2010 Sep 9. |
2010 Nov | biosynthesis | 20 | 5 | GT11, GT2, GT2, GT4 |
| PUL0516 | sequence homology analysis, microscopy | capsule polysaccharide | Bacteroides fragilis | 20829291 Twenty-eight divergent polysaccharide loci specifying within- and amongst-strain capsule diversity in three strains of Bacteroides fragilis. Microbiology (Reading). 2010 Nov;156(Pt 11):3255-3269. doi: 10.1099/mic.0.042978-0. Epub 2010 Sep 9. |
2010 Nov | biosynthesis | 13 | 5 | GT4, GT4, GT2, GT4 |
| PUL0518 | sequence homology analysis, microscopy | capsule polysaccharide | Bacteroides fragilis | 20829291 Twenty-eight divergent polysaccharide loci specifying within- and amongst-strain capsule diversity in three strains of Bacteroides fragilis. Microbiology (Reading). 2010 Nov;156(Pt 11):3255-3269. doi: 10.1099/mic.0.042978-0. Epub 2010 Sep 9. |
2010 Nov | biosynthesis | 22 | 4 | GT2, GT2, GT4, GT4 |
| PUL0521 | sequence homology analysis, microscopy | capsule polysaccharide | Bacteroides fragilis | 20829291 Twenty-eight divergent polysaccharide loci specifying within- and amongst-strain capsule diversity in three strains of Bacteroides fragilis. Microbiology (Reading). 2010 Nov;156(Pt 11):3255-3269. doi: 10.1099/mic.0.042978-0. Epub 2010 Sep 9. |
2010 Nov | biosynthesis | 23 | 3 | GT2, GT4 |
| PUL0522 | sequence homology analysis, microscopy | capsule polysaccharide | Bacteroides fragilis | 20829291 Twenty-eight divergent polysaccharide loci specifying within- and amongst-strain capsule diversity in three strains of Bacteroides fragilis. Microbiology (Reading). 2010 Nov;156(Pt 11):3255-3269. doi: 10.1099/mic.0.042978-0. Epub 2010 Sep 9. |
2010 Nov | biosynthesis | 20 | 7 | GT2, GT4, GT2, GT32, GT2, GT2 |
| PUL0523 | sequence homology analysis, microscopy | capsule polysaccharide | Bacteroides fragilis | 20829291 Twenty-eight divergent polysaccharide loci specifying within- and amongst-strain capsule diversity in three strains of Bacteroides fragilis. Microbiology (Reading). 2010 Nov;156(Pt 11):3255-3269. doi: 10.1099/mic.0.042978-0. Epub 2010 Sep 9. |
2010 Nov | biosynthesis | 14 | 5 | GT4, GT4, GT4, GT26 |
| PUL0524 | sequence homology analysis, microscopy | capsule polysaccharide | Bacteroides fragilis | 20829291 Twenty-eight divergent polysaccharide loci specifying within- and amongst-strain capsule diversity in three strains of Bacteroides fragilis. Microbiology (Reading). 2010 Nov;156(Pt 11):3255-3269. doi: 10.1099/mic.0.042978-0. Epub 2010 Sep 9. |
2010 Nov | biosynthesis | 13 | 7 | GT2, GT2, GT4, GT101, GT0, GT4, GT2, GT2 |
| PUL0525 | sequence homology analysis, microscopy | O-glycan | Bacteroides fragilis | 20829291 Twenty-eight divergent polysaccharide loci specifying within- and amongst-strain capsule diversity in three strains of Bacteroides fragilis. Microbiology (Reading). 2010 Nov;156(Pt 11):3255-3269. doi: 10.1099/mic.0.042978-0. Epub 2010 Sep 9. |
2010 Nov | biosynthesis | 9 | 5 | GT0, GT94, GT4, GT4, GT2 |
| PUL0621 | RNA-Seq | pectin | Prevotella sp. PROD | 33113351 Distinct Polysaccharide Utilization Determines Interspecies Competition between Intestinal Prevotella spp. Cell Host Microbe. 2020 Dec 9;28(6):838-852.e6. doi: 10.1016/j.chom.2020.09.012. Epub 2020 Oct 27. |
2020 Dec 9 | degradation | 8 | 4 | 3.2.1.37, GH3, CBM6, GH57, GT4, GH133 |
| PUL0656 | gene deletion mutant and growth assay, complementation study, clone and expression, isothermal titration calorimetry | exopolysaccharide | Bacillus cereus ATCC 10987 | 32236137 Discovery and characterization of a Gram-positive Pel polysaccharide biosynthetic gene cluster. PLoS Pathog. 2020 Apr 1;16(4):e1008281. doi: 10.1371/journal.ppat.1008281. eCollection 2020 Apr. |
2020 Apr | biosynthesis | 6 | 2 | GH0, GH166, GT4 |
| PUL0660 | NMR, Smith degradation | capsule polysaccharide | Acinetobacter baumannii 48-1789 | 34073255 Acinetobacter baumannii K106 and K112: Two Structurally and Genetically Related 6-Deoxy-l-talose-Containing Capsular Polysaccharides. Int J Mol Sci. 2021 May 26;22(11):5641. doi: 10.3390/ijms22115641. |
2021 May 26 | biosynthesis | 21 | 2 | GT2, GT4 |
| PUL0661 | NMR, Smith degradation | capsule polysaccharide | Acinetobacter baumannii MAR-24 | 34073255 Acinetobacter baumannii K106 and K112: Two Structurally and Genetically Related 6-Deoxy-l-talose-Containing Capsular Polysaccharides. Int J Mol Sci. 2021 May 26;22(11):5641. doi: 10.3390/ijms22115641. |
2021 May 26 | biosynthesis | 22 | 2 | GT2, GT4 |
| PUL0670 | NMR, Smith degradation, mass spectrometry | capsule polysaccharide | Acinetobacter baumannii KZ-1098 | 34537298 The K26 capsular polysaccharide from Acinetobacter baumannii KZ-1098: Structure and cleavage by a specific phage depolymerase. Int J Biol Macromol. 2021 Nov 30;191:182-191. doi: 10.1016/j.ijbiomac.2021.09.073. Epub 2021 Sep 16. |
2021 Nov 30 | biosynthesis | 24 | 2 | GT2, GT4 |
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