PUL ID |
PUL0602 |
PubMed |
26442136, Stand Genomic Sci. 2015 Oct 5;10:73. doi: 10.1186/s40793-015-0031-z. eCollection 2015. |
Characterization method |
sequence homology analysis |
Genomic accession number |
CP002835.1 |
Nucelotide position range |
2158671-2196700 |
Substrate |
xylan |
Loci |
Geoth_2242-Geoth_2272 |
Species |
Parageobacillus thermoglucosidasius/1426 |
Degradation or Biosynthesis |
degradation |
Cluster number |
1 | ||
Gene name |
Gene position |
Gene type |
Found by CGCFinder? |
- | 1 - 1500 (-) | CDS | No |
- | 1519 - 2844 (-) | CDS | No |
- | 5617 - 6279 (-) | CDS | No |
- | 6322 - 7116 (-) | CDS | No |
- | 9319 - 10557 (+) | CAZyme: CBM22|GH10 | Yes |
- | 10628 - 11272 (-) | TC: gnl|TC-DB|G4PA66|9.B.28.1.5 | Yes |
- | 11493 - 12338 (-) | other | Yes |
- | 12314 - 13429 (-) | other | Yes |
- | 13448 - 14851 (-) | other | Yes |
- | 14884 - 15582 (-) | TF: DBD-Pfam|GntR,DBD-SUPERFAMILY|0039384 | Yes |
- | 15715 - 16365 (-) | other | Yes |
- | 16385 - 17338 (-) | STP: STP|PfkB | Yes |
- | 17402 - 18913 (-) | CAZyme: GH39 | Yes |
- | 18929 - 20980 (-) | CAZyme: GH67 | Yes |
- | 20996 - 21886 (-) | TC: gnl|TC-DB|Q09LY6|3.A.1.1.9 | Yes |
- | 21900 - 22847 (-) | TC: gnl|TC-DB|Q09LY7|3.A.1.1.9 | Yes |
- | 22965 - 24611 (-) | TC: gnl|TC-DB|C9RT46|3.A.1.1.9 | Yes |
- | 26775 - 27770 (-) | CAZyme: GH10 | Yes |
- | 27773 - 29890 (-) | CAZyme: GH52 | Yes |
- | 30055 - 30675 (-) | CAZyme: CE4 | Yes |
- | 30691 - 31740 (-) | other | Yes |
- | 32087 - 32953 (-) | TC: gnl|TC-DB|G4FGN6|3.A.1.1.41 | Yes |
- | 32971 - 33837 (-) | TC: gnl|TC-DB|Q8RJU9|3.A.1.1.18 | Yes |
- | 34002 - 35324 (-) | STP: STP|SBP_bac_1 | Yes |
- | 35437 - 36225 (-) | TF: DBD-Pfam|HTH_AraC,DBD-Pfam|HTH_AraC,DBD-SUPERFAMILY|0036286,DBD-SUPERFAMILY|0035607 | Yes |
- | 36225 - 38030 (-) | TC: gnl|TC-DB|F4LXP4|8.A.59.2.1 | Yes |
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