PUL ID |
PUL0616 |
PubMed |
33113351, Cell Host Microbe. 2020 Dec 9;28(6):838-852.e6. doi: 10.1016/j.chom.2020.09.012. Epub 2020 Oct 27. |
Characterization method |
RNA-Seq |
Genomic accession number |
JABKKG010000005.1 |
Nucelotide position range |
52557-72877 |
Substrate |
pectin |
Loci |
HPS57_08295-HPS57_08340 |
Species |
Prevotella sp. PINT/2736291 |
Degradation or Biosynthesis |
degradation |
Gene Name |
Locus Tag |
Protein ID |
Gene Position |
GenBank Contig Range |
EC Number |
- | HPS57_08295 | NPD81973.1 | 0 - 2286 (-) | JABKKG010000005.1:52557-54843 | - |
- | HPS57_08300 | NPD81974.1 | 2299 - 5644 (-) | JABKKG010000005.1:54856-58201 | - |
- | HPS57_08305 | NPD81975.1 | 5696 - 7139 (-) | JABKKG010000005.1:58253-59696 | - |
- | HPS57_08310 | NPD81976.1 | 7220 - 8099 (-) | JABKKG010000005.1:59777-60656 | - |
- | HPS57_08315 | - | 8282 - 9957 (-) | JABKKG010000005.1:60839-62514 | - |
- | HPS57_08320 | NPD81977.1 | 10996 - 11959 (+) | JABKKG010000005.1:63553-64516 | - |
- | HPS57_08325 | NPD81978.1 | 12142 - 13021 (+) | JABKKG010000005.1:64699-65578 | - |
- | HPS57_08330 | NPD81979.1 | 13235 - 14732 (+) | JABKKG010000005.1:65792-67289 | - |
- | HPS57_08335 | NPD81980.1 | 14757 - 18078 (+) | JABKKG010000005.1:67314-70635 | - |
- | HPS57_08340 | NPD81981.1 | 18116 - 20321 (+) | JABKKG010000005.1:70673-72878 | - |
Cluster number |
1 | ||
Gene name |
Gene position |
Gene type |
Found by CGCFinder? |
- | 1 - 2286 (-) | CDS | No |
- | 2300 - 5644 (-) | TC: gnl|TC-DB|Q45780|1.B.14.6.1 | Yes |
- | 5697 - 7139 (-) | other | Yes |
- | 7221 - 8099 (-) | other | Yes |
- | 10997 - 11959 (+) | CAZyme: PL1_2|PL1_2 | Yes |
- | 12143 - 13021 (+) | other | Yes |
- | 13236 - 14732 (+) | other | Yes |
- | 14758 - 18078 (+) | TC: gnl|TC-DB|Q93TH9|1.B.14.6.2 | Yes |
- | 18117 - 20321 (+) | CDS | No |
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