PUL ID |
PUL0623 |
PubMed |
33113351, Cell Host Microbe. 2020 Dec 9;28(6):838-852.e6. doi: 10.1016/j.chom.2020.09.012. Epub 2020 Oct 27. |
Characterization method |
RNA-Seq |
Genomic accession number |
JABKKF010000001.1 |
Nucelotide position range |
275500-306619 |
Substrate |
pectin |
Loci |
HPS56_01020-HPS56_01090 |
Species |
Prevotella sp. PMUR/2736291 |
Degradation or Biosynthesis |
degradation |
Cluster number |
1 | ||
Gene name |
Gene position |
Gene type |
Found by CGCFinder? |
- | 1 - 28 (+) | CDS | No |
- | 1 - 2025 (+) | TC: gnl|TC-DB|P95494|1.B.14.10.1 | Yes |
- | 2022 - 6269 (+) | other | Yes |
- | 6269 - 6955 (+) | other | Yes |
- | 6952 - 7557 (+) | other | Yes |
- | 7554 - 7892 (+) | other | Yes |
- | 8038 - 10605 (-) | CAZyme: GH3| GH3 | Yes |
- | 11046 - 13397 (+) | other | Yes |
- | 13417 - 16692 (+) | TC: gnl|TC-DB|Q45780|1.B.14.6.1 | Yes |
- | 16709 - 18274 (+) | TC: gnl|TC-DB|Q5LEN2|8.A.46.1.4 | Yes |
- | 18287 - 20050 (+) | CDS | No |
- | 20066 - 21880 (+) | CDS | No |
- | 21901 - 25020 (+) | CDS | No |
- | 25029 - 26933 (+) | CDS | No |
- | 27040 - 29307 (+) | CDS | No |
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