dbCAN-seq: a database of CAZyme sequence and annotation

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alginate

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Alginates are from brown seaweeds, which are linear copolymers of MnA, β-1,4-D-mannuronic acid, and GlcA, α-1,4-L-guluronic acid. It exists as polyMnA, polyGlcA, or polyMnA−GlcA blocks.

References

Li, Jin, et al. "Insights into Algal Polysaccharides: A Review of Their Structure, Depolymerases, and Metabolic Pathways." Journal of Agricultural and Food Chemistry 70.6 (2022): 1749-1765. Click here to redirect detail information.

CAZyme Gene Cluster:

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Substrate	Genome_ID	CGC_ID	CGC_Content	PUL_ID	Species Name
alginate	MGYG000003403	MGYG000003403_1\|CGC2	PL6\|PL6_1,PL17_2\|PL17,2.A.1.14.25	PUL0053	Stenotrophomonas maltophilia
alginate	MGYG000004708	MGYG000004708_20\|CGC1	PL38,null,2.A.1.14.25,null,PL17\|PL17_2,PL6\|PL6_1,null,8.A.46.1.5,1.B.14.6.1	PUL0055
alginate	MGYG000001313	MGYG000001313_17\|CGC2	2.A.4.7.9,null,null,PL6\|PL6_1,null,8.A.46.1.2,1.B.14.6.1,null,PL17\|PL17_2,null,2.A.1.14.25	PUL0056	Bacteroides eggerthii
alginate	MGYG000003711	MGYG000003711_3\|CGC1	PL6\|PL6_1,PL17_2\|PL17,2.A.1.14.25	PUL0053	Stenotrophomonas maltophilia
alginate	MGYG000000437	MGYG000000437_33\|CGC1	PL38,null,2.A.1.14.25,null,PL17\|PL17_2,PL6_1\|PL6	PUL0199	Alistipes sp001941065
alginate	MGYG000002381	MGYG000002381_61\|CGC1	2.A.1.14.25,PL17\|PL17_2,PL6\|PL6_1,1.B.14.12.1,GntR,null,1.B.71.1.4,2.A.1.36.3	PUL0053	Stenotrophomonas bentonitica

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You are here: Home > Substrate: alginate

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