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You are here: Home > Substrate: alginate

alginate
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Alginates are from brown seaweeds, which are linear copolymers of MnA, β-1,4-D-mannuronic acid, and GlcA, α-1,4-L-guluronic acid. It exists as polyMnA, polyGlcA, or polyMnA−GlcA blocks.
References
Li, Jin, et al. "Insights into Algal Polysaccharides: A Review of Their Structure, Depolymerases, and Metabolic Pathways." Journal of Agricultural and Food Chemistry 70.6 (2022): 1749-1765. Click here to redirect detail information.

CAZyme Gene Cluster:
Substrate Genome_ID CGC_ID CGC_Content PUL_ID Species Name
alginate MGYG000000029 MGYG000000029_9|CGC3
1.B.14.6.1,8.A.46.1.5,null,PL6_1|PL6,PL17_2,AraC_binding,2.A.1.14.25,null,PL38
PUL0055 Bacteroides finegoldii
alginate MGYG000000054 MGYG000000054_17|CGC2
1.B.14.6.1,8.A.46.1.5,null,PL6_1|PL6,PL17|PL17_2,AraC_binding,2.A.1.14.25,null,PL38
PUL0055 Bacteroides acidifaciens
alginate MGYG000000312 MGYG000000312_4|CGC2
3.A.1.1.10,3.A.1.1.10,3.A.1.1.10,HTH_AraC,PL15
PUL0216 Eisenbergiella sp900539715
alginate MGYG000000437 MGYG000000437_33|CGC1
PL38,null,2.A.1.14.25,null,PL17|PL17_2,PL6_1|PL6
PUL0199 Alistipes sp001941065
alginate MGYG000000633 MGYG000000633_29|CGC2
3.A.1.1.34,3.A.1.1.36,SBP_bac_1,null,CE15,null,null,PL0|PL35,GH148
PUL0155 Victivallis sp900768515
alginate MGYG000000852 MGYG000000852_1|CGC3
GH88|PL38,GH2,1.B.14.6.1,8.A.46.1.5,null,PL6|PL6_1,PL17|PL17_2,AraC_binding,2.A.1.14.25,null,PL38
PUL0055 Prevotella sp900545525
alginate MGYG000001056 MGYG000001056_208|CGC1
PL38,null,2.A.1.14.25,null,PL17|PL17_2,null,PL6_1|PL6,null,8.A.46.1.5,1.B.14.6.1
PUL0055 Prevotella sp900556395
alginate MGYG000001279 MGYG000001279_50|CGC1
2.A.50.2.1,PL5_1|PL5,null,null,1.B.13.1.1,null,null,GT2
PUL0572 Pseudomonas
alginate MGYG000001313 MGYG000001313_17|CGC2
2.A.4.7.9,null,null,PL6|PL6_1,null,8.A.46.1.2,1.B.14.6.1,null,PL17|PL17_2,null,2.A.1.14.25
PUL0056 Bacteroides eggerthii
alginate MGYG000001371 MGYG000001371_136|CGC2
PL15|PL15_1,PL17,PALP,8.A.59.2.1,HTH_AraC+HTH_AraC,SBP_bac_1,3.A.1.1.29,3.A.1.1.10,null,GH88
PUL0155 Paenibacillus lautus
alginate MGYG000001404 MGYG000001404_5|CGC2
2.A.53.3.4,PL15_1|PL15,PL17,null,8.A.59.2.1,HTH_AraC+HTH_AraC,SBP_bac_1,3.A.1.1.29,3.A.1.1.10
PUL0155 Paenibacillus
alginate MGYG000001436 MGYG000001436_1|CGC7
PL17,null,null,CBM32|PL6|PL6_2|GH16,8.A.59.2.1,HTH_AraC+HTH_AraC,SBP_bac_1,3.A.1.1.29,3.A.1.1.10
PUL0199 Paenibacillus
alginate MGYG000001485 MGYG000001485_6|CGC6
2.A.50.2.1,PL5_1|PL5,null,null,1.B.13.1.1,null,null,GT2
PUL0572 Pseudomonas
alginate MGYG000001542 MGYG000001542_9|CGC1
PL15|PL15_1,null,8.A.59.2.1,HTH_AraC+HTH_AraC,3.A.1.1.29,null,3.A.1.1.29,3.A.1.1.10,2.A.1.31.4
PUL0155 Paenibacillus
alginate MGYG000001663 MGYG000001663_26|CGC1
PL6|PL6_1,PL17_2,AraC_binding,2.A.1.14.25,null,PL38
PUL0199 Alistipes sp900760675
alginate MGYG000001770 MGYG000001770_24|CGC1
1.B.14.6.1,8.A.46.1.5,null,PL6|PL6_1,PL17_2|PL17,null,2.A.1.14.25,null,PL38,null,null,1.A.33.1.2
PUL0055 Prevotella sp900313215
alginate MGYG000002082 MGYG000002082_9|CGC1
1.B.9.4.3,null,null,1.B.14.6.1,PL6_1|PL6,PL17_2|PL17
PUL0055 Alistipes sp900544265
alginate MGYG000002272 MGYG000002272_4|CGC1
3.A.1.1.10,3.A.1.1.10,3.A.1.1.10,null,null,3.A.1.1.26,null,null,PL0|PL34,PL0|PL17,null,AraC_binding,3.A.7.19.1
PUL0155 Faecalibacterium prausnitzii
alginate MGYG000002293 MGYG000002293_7|CGC3
1.B.14.6.1,8.A.46.1.5,null,PL6|PL6_1,PL17_2|PL17,AraC_binding,2.A.1.14.25,null,PL38
PUL0055 Prevotella sp900557255
alginate MGYG000002326 MGYG000002326_50|CGC1
3.A.1.1.10,3.A.1.1.29,3.A.1.1.10,HTH_AraC+HTH_AraC,8.A.59.2.1,AraC_binding,null,PL15_1|PL15,CBM32
PUL0155 Alkalihalobacillus alcalophilus
alginate MGYG000002381 MGYG000002381_61|CGC1
2.A.1.14.25,PL17|PL17_2,PL6|PL6_1,1.B.14.12.1,GntR,null,1.B.71.1.4,2.A.1.36.3
PUL0053 Stenotrophomonas bentonitica
alginate MGYG000002414 MGYG000002414_1|CGC44
CBM32,null,3.A.1.1.10,3.A.1.1.29,HTH_AraC+HTH_AraC,8.A.59.2.1,null,PL17,PL15_1|PL15,3.A.1.1.29
PUL0155 Paenibacillus odorifer
alginate MGYG000002439 MGYG000002439_19|CGC1
3.A.1.1.46,null,null,PL0|PL34,PL0|PL17,null,AraC_binding,GH88
PUL0151 CHH4-2 sp002899675
alginate MGYG000002463 MGYG000002463_13|CGC3
4.A.2.1.17,PfkB,4.A.2.1.17,null,null,2.A.7.22.1,GT83,null,null,GT2,Aminotran_1_2,GT4,null,null,2.A.50.2.1,PL5|PL5_1,null,null,1.B.13.1.1,null,null,GT2,null,null,3.A.1.10.4,null,null,1.B.12.5.6,3.D.1.9.2
PUL0572 Pseudomonas aeruginosa
alginate MGYG000002490 MGYG000002490_4|CGC1
2.A.7.1.4,2.A.7.1.4,PL33_1|PL0,HTH_AraC+HTH_AraC,3.A.1.1.29,3.A.1.1.10,3.A.1.1.10,null,LacI,GH31,9.B.20.1.4,3.A.1.1.2,3.A.1.1.2,3.A.1.1.2
PUL0155 Paenibacillus
alginate MGYG000002685 MGYG000002685_69|CGC1
PL35|CBM32,3.A.1.1.10,3.A.1.1.10,3.A.1.1.10,PL33_2|PL0
PUL0155
alginate MGYG000002817 MGYG000002817_26|CGC1
3.A.1.1.2,3.A.1.1.2,3.A.1.1.2,9.B.20.1.4,GH31,LacI,null,3.A.1.1.10,3.A.1.1.10,3.A.1.1.29,HTH_AraC+HTH_AraC,null,PL33_1|PL0,2.A.7.1.4,2.A.7.1.4
PUL0155 Paenibacillus
alginate MGYG000002885 MGYG000002885_8|CGC1
GT2,null,null,1.B.13.1.1,null,null,PL5|PL5_1
PUL0572 Pseudomonas
alginate MGYG000003072 MGYG000003072_37|CGC1
CBM32,SBP_bac_1,PL15_1|PL15,null,9.B.33.1.1,HTH_AraC+HTH_AraC,3.A.1.1.29,3.A.1.1.10
PUL0155 Paenibacillus amylolyticus
alginate MGYG000003208 MGYG000003208_24|CGC3
2.A.50.2.1,PL5_1|PL5,null,null,1.B.13.1.1,null,null,GT2,null,null,3.A.23.1.1
PUL0572 Pseudomonas
alginate MGYG000003252 MGYG000003252_52|CGC10
1.B.14.6.1,8.A.46.1.5,null,PL6_1|PL6,PL17|PL17_2,AraC_binding,2.A.1.14.25,null,PL38
PUL0055 Bacteroides sp900761785
alginate MGYG000003279 MGYG000003279_12|CGC1
GH20,GH36,null,GH88|PL29,PL17|PL17_2,PL6|PL6_1,PL6|PL6_1,null,8.A.46.1.5,1.B.14.6.1
PUL0055 Alistipes sp900541585
alginate MGYG000003351 MGYG000003351_131|CGC1
PL38,null,2.A.1.14.25,AraC_binding,PL17|PL17_2,PL6_1|PL6,null,8.A.46.1.5,1.B.14.6.1,GntR,GH109,null,1.B.14.6.1
PUL0055 Bacteroides sp900765785
alginate MGYG000003403 MGYG000003403_1|CGC2
PL6|PL6_1,PL17_2|PL17,2.A.1.14.25
PUL0053 Stenotrophomonas maltophilia
alginate MGYG000003711 MGYG000003711_3|CGC1
PL6|PL6_1,PL17_2|PL17,2.A.1.14.25
PUL0053 Stenotrophomonas maltophilia
alginate MGYG000003831 MGYG000003831_11|CGC1
2.A.1.14.25,null,PL17_2|PL17,PL6|PL6_1,null,8.A.46.1.5,1.B.14.6.1,null,8.A.21.2.2,null,GH16|GH16_3,1.B.14.6.1,null,null,GH5_46|GH5,GH3,GH3,1.A.62.2.1
PUL0055
alginate MGYG000003834 MGYG000003834_4|CGC1
3.A.1.1.10,3.A.1.1.10,3.A.1.1.10,HTH_AraC,PL15
PUL0216 Eisenbergiella sp900550285
alginate MGYG000004003 MGYG000004003_7|CGC2
PL38,null,2.A.1.14.25,null,PL17_2|PL17,PL6|PL6_1,null,8.A.46.1.5,1.B.14.6.1
PUL0055
alginate MGYG000004044 MGYG000004044_76|CGC1
3.A.1.135.5,3.A.1.135.5,PL0|PL33_1
PUL0155 UMGS1633 sp900553645
alginate MGYG000004151 MGYG000004151_80|CGC1
GT4,null,null,2.A.50.2.1,PL5_1|PL5,null,null,1.B.13.1.1,null,null,GT2
PUL0572 Pseudomonas citronellolis
alginate MGYG000004172 MGYG000004172_1|CGC3
PL38,null,2.A.1.14.25,null,PL17_2,PL6|PL6_1
PUL0199
alginate MGYG000004708 MGYG000004708_20|CGC1
PL38,null,2.A.1.14.25,null,PL17|PL17_2,PL6|PL6_1,null,8.A.46.1.5,1.B.14.6.1
PUL0055

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