PUL ID |
PUL0055 |
PubMed |
29795267, Sci Rep. 2018 May 23;8(1):8075. doi: 10.1038/s41598-018-26104-1. |
Characterization method |
sequence homology analysis |
Genomic accession number |
GL945092.1 |
Nucelotide position range |
21043-32944 |
Substrate |
alginate |
Loci |
HMPREF0127_01346-HMPREF0127_01352 |
Species |
Bacteroides sp. 1_1_30/457387 |
Degradation or Biosynthesis |
degradation |
Gene Name |
Locus Tag |
Protein ID |
Gene Position |
GenBank Contig Range |
EC Number |
- | HMPREF0127_01346 | EGN08295.1 | 0 - 2208 (-) | GL945092.1:21043-23251 | - |
- | HMPREF0127_01347 | EGN08296.1 | 2254 - 4519 (-) | GL945092.1:23297-25562 | - |
- | HMPREF0127_01348 | EGN08297.1 | 4522 - 6205 (-) | GL945092.1:25565-27248 | - |
- | HMPREF0127_01349 | EGN08298.1 | 6225 - 7746 (-) | GL945092.1:27268-28789 | - |
- | HMPREF0127_01350 | EGN08299.1 | 7758 - 10941 (-) | GL945092.1:28801-31984 | - |
- | HMPREF0127_01351 | EGN08300.1 | 11043 - 11160 (-) | GL945092.1:32086-32203 | - |
- | HMPREF0127_01352 | EGN08301.1 | 11182 - 11902 (+) | GL945092.1:32225-32945 | - |
Cluster number |
1 | ||
Gene name |
Gene position |
Gene type |
Found by CGCFinder? |
- | 1 - 2208 (-) | CAZyme: PL17|PL17_2 | Yes |
- | 2255 - 4519 (-) | CAZyme: PL6|PL6_1 | Yes |
- | 4523 - 6205 (-) | other | Yes |
- | 6226 - 7746 (-) | TC: gnl|TC-DB|E4RVP8|8.A.46.1.5 | Yes |
- | 7759 - 10941 (-) | TC: gnl|TC-DB|Q45780|1.B.14.6.1 | Yes |
- | 11044 - 11160 (-) | CDS | No |
- | 11183 - 11902 (+) | TF: DBD-Pfam|GntR,DBD-SUPERFAMILY|0039384 | No |
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