| Basic Information | |
|---|---|
| Species | Ricinus communis |
| Cazyme ID | 30936.m000030 |
| Family | GH105 |
| Protein Properties | Length: 375 Molecular Weight: 43155.6 Isoelectric Point: 8.1116 |
| Chromosome | Chromosome/Scaffold: 30936 Start: 665 End: 1792 |
| Description | |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
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| Family | Start | End | Evalue |
| GH105 | 47 | 370 | 0 |
| SPQKWAFWDIAAYHTGNMEAYQITGNPAWRKYSEDWAAHNQWQGARSTNKATWKYQYGETDDHVLFGDWQICFQTYADLYKLTPDPKKIARAREVMEYEM STPNNDYWWWSDGLYMVMPVMTKLYTITGNRQYLDKLHDYFEYANSIMYDKDAQLYYRDARYVYPKHQSVNGKKDFWSRGDGWVFAGLAKVLKDLPKDDP HRGDYIAKFKGMAQALKKAQTDDGYWTRSLLDPQHAPGPETSGTAFFVYGYLWGINNGLLERDEYLPVVRKGWRYLSKTALQPDGKIGYVQPIGDRAIPG QVVDQNSTTAFGVGAYLLASSELV | |||
| Full Sequence |
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| Protein Sequence Length: 375 Download |
| MRRLYAASLL AASLTGCASA PPAVDTSEQE VVGIINKVNS YWQQRESPQK WAFWDIAAYH 60 TGNMEAYQIT GNPAWRKYSE DWAAHNQWQG ARSTNKATWK YQYGETDDHV LFGDWQICFQ 120 TYADLYKLTP DPKKIARARE VMEYEMSTPN NDYWWWSDGL YMVMPVMTKL YTITGNRQYL 180 DKLHDYFEYA NSIMYDKDAQ LYYRDARYVY PKHQSVNGKK DFWSRGDGWV FAGLAKVLKD 240 LPKDDPHRGD YIAKFKGMAQ ALKKAQTDDG YWTRSLLDPQ HAPGPETSGT AFFVYGYLWG 300 INNGLLERDE YLPVVRKGWR YLSKTALQPD GKIGYVQPIG DRAIPGQVVD QNSTTAFGVG 360 AYLLASSELV RLLRQ |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| TIGR03897 | lanti_2_LanM | 0.0003 | 125 | 226 | 116 | + type 2 lantibiotic biosynthesis protein LanM. Members of this family are known generally as LanM, a multifunctional enzyme of lantibiotic biosynthesis. This catalysis by LanM distinguishes the type 2 lantibiotics, such as mersacidin, cinnamycin, and lichenicidin, from LanBC-produced type 1 lantibiotics such as nisin and subtilin. The N-terminal domain contains regions associated with Ser and Thr dehydration. The C-terminal region contains a pfam05147 domain, which catalyzes the formation of the lanthionine bridge [Cellular processes, Toxin production and resistance]. | ||
| COG4225 | COG4225 | 1.0e-39 | 62 | 373 | 335 | + Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only] | ||
| pfam07470 | Glyco_hydro_88 | 4.0e-91 | 26 | 373 | 364 | + Glycosyl Hydrolase Family 88. Unsaturated glucuronyl hydrolase catalyzes the hydrolytic release of unsaturated glucuronic acids from oligosaccharides (EC:3.2.1.-) produced by the reactions of polysaccharide lyases. | ||
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EFF57788.1 | 0 | 1 | 375 | 1 | 377 | glycosyl hydrolase, family 88 [Bacteroides ovatus SD CC 2a] |
| RefSeq | NP_812598.1 | 0 | 1 | 374 | 1 | 376 | hypothetical protein BT_3687 [Bacteroides thetaiotaomicron VPI-5482] |
| RefSeq | XP_002535952.1 | 0 | 1 | 375 | 1 | 375 | conserved hypothetical protein [Ricinus communis] |
| RefSeq | ZP_02066497.1 | 0 | 1 | 375 | 14 | 390 | hypothetical protein BACOVA_03494 [Bacteroides ovatus ATCC 8483] |
| RefSeq | ZP_04545830.1 | 0 | 1 | 375 | 1 | 377 | glycosyl hydrolase [Bacteroides sp. D1] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3k11_A | 0.00000000002 | 156 | 373 | 200 | 414 | A Chain A, Crystal Structure Of Putative Glycosyl Hydrolase (Np_813087.1) From Bacteroides Thetaiotaomicron Vpi-5482 At 1.80 A Resolution |
| PDB | 3qwt_D | 0.00000000006 | 67 | 333 | 80 | 338 | A Chain A, The Crystal Structure Of A Possible Member Of Gh105 Family From Salmonella Enterica Subsp. Enterica Serovar Paratyphi A Str. Atcc 9150 |
| PDB | 3qwt_C | 0.00000000006 | 67 | 333 | 80 | 338 | A Chain A, The Crystal Structure Of A Possible Member Of Gh105 Family From Salmonella Enterica Subsp. Enterica Serovar Paratyphi A Str. Atcc 9150 |
| PDB | 3qwt_B | 0.00000000006 | 67 | 333 | 80 | 338 | A Chain A, The Crystal Structure Of A Possible Member Of Gh105 Family From Salmonella Enterica Subsp. Enterica Serovar Paratyphi A Str. Atcc 9150 |
| PDB | 3qwt_A | 0.00000000006 | 67 | 333 | 80 | 338 | A Chain A, The Crystal Structure Of A Possible Member Of Gh105 Family From Salmonella Enterica Subsp. Enterica Serovar Paratyphi A Str. Atcc 9150 |
| Signal Peptide | |||||
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| Cleavage Site | |||||
| 19 | |||||
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| FC344866 | 172 | 221 | 372 | 0.0000004 |
| BJ974739 | 167 | 222 | 372 | 0.000001 |
| BJ290060 | 168 | 156 | 317 | 0.000009 |
| BJ296393 | 171 | 156 | 320 | 0.00001 |
| HO520207 | 233 | 130 | 345 | 0.00006 |
| Orthologous Group | |||||
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| Species | ID | ||||
| Physcomitrella patens | Pp1s210_72V6.1 | Pp1s43_51V6.1 | Pp1s192_4V6.2 | Pp1s192_4V6.1 | Pp1s62_191V6.2 |
| Pp1s62_191V6.1 | Pp1s23_318V6.1 | ||||
| Ricinus communis | 51000.m000023 | ||||
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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