PlantCAZyme

Basic Information
Species	Physcomitrella patens
Cazyme ID	Pp1s62_191V6.2
Family	GH105
Protein Properties	Length: 412 Molecular Weight: 46912 Isoelectric Point: 9.6242
Chromosome	Chromosome/Scaffold: 62 Start: 1471204 End: 1472847
Description
View CDS

External Links
NCBI Taxonomy
Plaza
CAZyDB

Signature Domain Download full data set without filtering

Family	Start	End	Evalue
GH105	66	406	0
PAKDRFQYELGVFLRGIELVWEATDDKKYFEYIKFKVDRFVANNGTINYNFTEFTLDNILTGRLVLSLYERTKDNKYKKAAQILREQLRQQPRTHEGGFW HKLTYPYQMWLDGLYMAEPFYAEFAKLFHEYNAFGDIAKQFIIMELRSRDSKTGLLYHGYDESRVQNWSDPKTGRSPSFWGRAVGWYFMAIVDTLDFFPM YHPKRVQLLAIVNRLAIAVKKVQDQKTGLWWQVLDKPNKKGNYLESSASSMFVYSYAKGARKGYISPVYIATAKKGYEGIVKNFAVKLSDGGLNYTRIAS VGGLGGTHYRNGTFEYYISEPIVTNDPKGVGPFMMASVEIS

Full Sequence
Protein Sequence Length: 412 Download
MIKSGALEMR STCGSFVTMA VLVLILCLGS LLPVTSFEAD IDKEQSLTLA ERMAKTSMSL 60 WAVTGPAKDR FQYELGVFLR GIELVWEATD DKKYFEYIKF KVDRFVANNG TINYNFTEFT 120 LDNILTGRLV LSLYERTKDN KYKKAAQILR EQLRQQPRTH EGGFWHKLTY PYQMWLDGLY 180 MAEPFYAEFA KLFHEYNAFG DIAKQFIIME LRSRDSKTGL LYHGYDESRV QNWSDPKTGR 240 SPSFWGRAVG WYFMAIVDTL DFFPMYHPKR VQLLAIVNRL AIAVKKVQDQ KTGLWWQVLD 300 KPNKKGNYLE SSASSMFVYS YAKGARKGYI SPVYIATAKK GYEGIVKNFA VKLSDGGLNY 360 TRIASVGGLG GTHYRNGTFE YYISEPIVTN DPKGVGPFMM ASVEISRSTP V* 420

Full Sequence

Protein Sequence Length: 412 Download

MIKSGALEMR STCGSFVTMA VLVLILCLGS LLPVTSFEAD IDKEQSLTLA ERMAKTSMSL    60
WAVTGPAKDR FQYELGVFLR GIELVWEATD DKKYFEYIKF KVDRFVANNG TINYNFTEFT    120
LDNILTGRLV LSLYERTKDN KYKKAAQILR EQLRQQPRTH EGGFWHKLTY PYQMWLDGLY    180
MAEPFYAEFA KLFHEYNAFG DIAKQFIIME LRSRDSKTGL LYHGYDESRV QNWSDPKTGR    240
SPSFWGRAVG WYFMAIVDTL DFFPMYHPKR VQLLAIVNRL AIAVKKVQDQ KTGLWWQVLD    300
KPNKKGNYLE SSASSMFVYS YAKGARKGYI SPVYIATAKK GYEGIVKNFA VKLSDGGLNY    360
TRIASVGGLG GTHYRNGTFE YYISEPIVTN DPKGVGPFMM ASVEISRSTP V*            420

Functional Domains Download unfiltered results here

Cdd ID	Domain	E-Value	Start	End	Length	Domain Description
TIGR03897	lanti_2_LanM	0.0001	89	251	181	+ type 2 lantibiotic biosynthesis protein LanM. Members of this family are known generally as LanM, a multifunctional enzyme of lantibiotic biosynthesis. This catalysis by LanM distinguishes the type 2 lantibiotics, such as mersacidin, cinnamycin, and lichenicidin, from LanBC-produced type 1 lantibiotics such as nisin and subtilin. The N-terminal domain contains regions associated with Ser and Thr dehydration. The C-terminal region contains a pfam05147 domain, which catalyzes the formation of the lanthionine bridge [Cellular processes, Toxin production and resistance].
pfam07470	Glyco_hydro_88	5.0e-95	50	407	364	+ Glycosyl Hydrolase Family 88. Unsaturated glucuronyl hydrolase catalyzes the hydrolytic release of unsaturated glucuronic acids from oligosaccharides (EC:3.2.1.-) produced by the reactions of polysaccharide lyases.
COG4225	COG4225	5.0e-106	41	407	367	+ Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]

Annotations - NR Download unfiltered results here
Source	Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
RefSeq	XP_001756707.1	0	58	407	1	352	predicted protein [Physcomitrella patens subsp. patens]
RefSeq	XP_001760573.1	0	58	407	1	352	predicted protein [Physcomitrella patens subsp. patens]
RefSeq	XP_001763702.1	0	58	411	1	354	predicted protein [Physcomitrella patens subsp. patens]
RefSeq	XP_001775466.1	0	65	407	2	346	predicted protein [Physcomitrella patens subsp. patens]
RefSeq	XP_001776763.1	0	58	409	1	354	predicted protein [Physcomitrella patens subsp. patens]

Annotations - PDB Download unfiltered results here
Source	Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
PDB	2d8l_A	0	36	405	3	364	A Chain A, The Crystal Structure Of A Possible Member Of Gh105 Family From Salmonella Enterica Subsp. Enterica Serovar Paratyphi A Str. Atcc 9150
PDB	1nc5_A	0	36	405	3	364	A Chain A, Structure Of Protein Of Unknown Function Of Yter From Bacillus Subtilis
PDB	2gh4_A	0	47	406	4	355	A Chain A, YterD143NDGALA-Rha
PDB	3qwt_D	1e-20	71	408	65	379	A Chain A, The Crystal Structure Of A Possible Member Of Gh105 Family From Salmonella Enterica Subsp. Enterica Serovar Paratyphi A Str. Atcc 9150
PDB	3qwt_C	1e-20	71	408	65	379	A Chain A, The Crystal Structure Of A Possible Member Of Gh105 Family From Salmonella Enterica Subsp. Enterica Serovar Paratyphi A Str. Atcc 9150

EST Download unfiltered results here

Hit	Length	Start	End	EValue
BJ586628	223	190	412	0
BJ611477	217	196	412	0
FC344866	196	212	407	0
BJ865962	241	130	370	0
BY989271	200	41	239	0

Orthologous Group
Species	ID
Physcomitrella patens	Pp1s210_72V6.1	Pp1s43_51V6.1	Pp1s192_4V6.2	Pp1s192_4V6.1	Pp1s62_191V6.1
	Pp1s23_318V6.1
Ricinus communis	30936.m000030	51000.m000023

CAZyme Information