PlantCAZyme

Basic Information
Species	Physcomitrella patens
Cazyme ID	Pp1s192_4V6.2
Family	GH105
Protein Properties	Length: 400 Molecular Weight: 45819.8 Isoelectric Point: 9.6082
Chromosome	Chromosome/Scaffold: 192 Start: 19526 End: 21779
Description
View CDS

External Links
NCBI Taxonomy
Plaza
CAZyDB

Signature Domain Download full data set without filtering

Family	Start	End	Evalue
GH105	55	398	0
PAKDRFQYELGVFLRGIELVWKATGDKSYFDYIKFKVERHVMDNGTIAGNYNFTEFTLDNILTGRLLLTLYRQTGEMKYRTAAKTLREQLRQQPRTREGG FWHKLVYPYQMWLDGLYMAEPFYAEYGTLFHEPKEFNDIASQFIIMEKHSRDSKSGLLYHGYDESRAQNWSDPKTGRSPSFWGRAMGWYFMAIVDTLEYF PKHHPKRAHLLAITHRLAIVLKEVQDSKSGLWWQVLDKPYKKGNYLESSASAMFVYSYAKGVRKGYLPKMYLSVAQKGYVGIVSNFVVETADMGVNYTRI ASVGGLGGTPYRNGTFEYYISEPIATNDPKGVGPFMMCSVEMAR

Full Sequence
Protein Sequence Length: 400 Download
MKSRYGLFLV AIGISIMCLG PWIPVASATV SEHEPLDLAK RMAITSMKEW RVMGPAKDRF 60 QYELGVFLRG IELVWKATGD KSYFDYIKFK VERHVMDNGT IAGNYNFTEF TLDNILTGRL 120 LLTLYRQTGE MKYRTAAKTL REQLRQQPRT REGGFWHKLV YPYQMWLDGL YMAEPFYAEY 180 GTLFHEPKEF NDIASQFIIM EKHSRDSKSG LLYHGYDESR AQNWSDPKTG RSPSFWGRAM 240 GWYFMAIVDT LEYFPKHHPK RAHLLAITHR LAIVLKEVQD SKSGLWWQVL DKPYKKGNYL 300 ESSASAMFVY SYAKGVRKGY LPKMYLSVAQ KGYVGIVSNF VVETADMGVN YTRIASVGGL 360 GGTPYRNGTF EYYISEPIAT NDPKGVGPFM MCSVEMARV*

Full Sequence

Protein Sequence Length: 400 Download

MKSRYGLFLV AIGISIMCLG PWIPVASATV SEHEPLDLAK RMAITSMKEW RVMGPAKDRF    60
QYELGVFLRG IELVWKATGD KSYFDYIKFK VERHVMDNGT IAGNYNFTEF TLDNILTGRL    120
LLTLYRQTGE MKYRTAAKTL REQLRQQPRT REGGFWHKLV YPYQMWLDGL YMAEPFYAEY    180
GTLFHEPKEF NDIASQFIIM EKHSRDSKSG LLYHGYDESR AQNWSDPKTG RSPSFWGRAM    240
GWYFMAIVDT LEYFPKHHPK RAHLLAITHR LAIVLKEVQD SKSGLWWQVL DKPYKKGNYL    300
ESSASAMFVY SYAKGVRKGY LPKMYLSVAQ KGYVGIVSNF VVETADMGVN YTRIASVGGL    360
GGTPYRNGTF EYYISEPIAT NDPKGVGPFM MCSVEMARV* 

Functional Domains Download unfiltered results here

Cdd ID	Domain	E-Value	Start	End	Length	Domain Description
TIGR03897	lanti_2_LanM	0.004	78	236	178	+ type 2 lantibiotic biosynthesis protein LanM. Members of this family are known generally as LanM, a multifunctional enzyme of lantibiotic biosynthesis. This catalysis by LanM distinguishes the type 2 lantibiotics, such as mersacidin, cinnamycin, and lichenicidin, from LanBC-produced type 1 lantibiotics such as nisin and subtilin. The N-terminal domain contains regions associated with Ser and Thr dehydration. The C-terminal region contains a pfam05147 domain, which catalyzes the formation of the lanthionine bridge [Cellular processes, Toxin production and resistance].
pfam07470	Glyco_hydro_88	4.0e-100	39	398	362	+ Glycosyl Hydrolase Family 88. Unsaturated glucuronyl hydrolase catalyzes the hydrolytic release of unsaturated glucuronic acids from oligosaccharides (EC:3.2.1.-) produced by the reactions of polysaccharide lyases.
COG4225	COG4225	8.0e-110	54	398	345	+ Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]

Annotations - NR Download unfiltered results here
Source	Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
RefSeq	XP_001756707.1	0	47	399	1	353	predicted protein [Physcomitrella patens subsp. patens]
RefSeq	XP_001760573.1	0	47	399	1	353	predicted protein [Physcomitrella patens subsp. patens]
RefSeq	XP_001763702.1	0	47	398	1	350	predicted protein [Physcomitrella patens subsp. patens]
RefSeq	XP_001775466.1	0	53	399	1	347	predicted protein [Physcomitrella patens subsp. patens]
RefSeq	XP_001776763.1	0	47	397	1	351	predicted protein [Physcomitrella patens subsp. patens]

Annotations - PDB Download unfiltered results here
Source	Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
PDB	2d8l_A	0	29	396	7	364	A Chain A, The Crystal Structure Of A Possible Member Of Gh105 Family From Salmonella Enterica Subsp. Enterica Serovar Paratyphi A Str. Atcc 9150
PDB	1nc5_A	0	29	396	7	364	A Chain A, Structure Of Protein Of Unknown Function Of Yter From Bacillus Subtilis
PDB	2gh4_A	0	35	396	3	354	A Chain A, YterD143NDGALA-Rha
PDB	3pmm_A	8e-27	60	398	66	379	A Chain A, The Crystal Structure Of A Possible Member Of Gh105 Family From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
PDB	3qwt_D	8e-24	60	398	65	378	A Chain A, The Crystal Structure Of A Possible Member Of Gh105 Family From Salmonella Enterica Subsp. Enterica Serovar Paratyphi A Str. Atcc 9150

EST Download unfiltered results here

Hit	Length	Start	End	EValue
FC344866	199	202	400	0
BJ586628	216	183	398	0
BJ611477	209	190	398	0
BY952867	202	1	202	0
BJ865962	241	121	361	0

Orthologous Group
Species	ID
Physcomitrella patens	Pp1s210_72V6.1	Pp1s43_51V6.1	Pp1s192_4V6.1	Pp1s62_191V6.2	Pp1s62_191V6.1
	Pp1s23_318V6.1
Ricinus communis	30936.m000030	51000.m000023

CAZyme Information