| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra035299 |
| Family | GH28 |
| Protein Properties | Length: 479 Molecular Weight: 52669.4 Isoelectric Point: 5.3802 |
| Chromosome | Chromosome/Scaffold: 000103 Start: 141188 End: 142760 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH28 | 74 | 400 | 0 |
| SSSICRVKFPLGTYLTAKLHLRSGVLLDVTENAVLLGGPRIEDYPAETSSEWYVVVANNATDVGITGGGAIDGQGSKFVVRFDERKNVMVSWNQTGACLG DECRPRLVGFVDSTNVHIWNITLRDPAYWCLHIVRCENTSVHDVSILGDFNTPNNDGIDIEDSNNTFITRCHIDTGDDAICPKTYVAPLYNLTVTDCWIR TKSSAIKLGSASWFEFKSLVFDNITISESHRGLGMQIRDGGNVNGITFSNMNISTRYYDPSWWGRAEPIYITTCPRDSSSKEGSISNLLFVNITIVSENG VFLSGSPNGLLTDIKFKNMNITLRRWS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 479 Download |
| MDFPLLLRSI LLPLCLLFSV IQSRPYTSSQ KIQLPGDSLA LSVADFGATG DGIHYDTSAI 60 QSAINACNHH YTSSSSICRV KFPLGTYLTA KLHLRSGVLL DVTENAVLLG GPRIEDYPAE 120 TSSEWYVVVA NNATDVGITG GGAIDGQGSK FVVRFDERKN VMVSWNQTGA CLGDECRPRL 180 VGFVDSTNVH IWNITLRDPA YWCLHIVRCE NTSVHDVSIL GDFNTPNNDG IDIEDSNNTF 240 ITRCHIDTGD DAICPKTYVA PLYNLTVTDC WIRTKSSAIK LGSASWFEFK SLVFDNITIS 300 ESHRGLGMQI RDGGNVNGIT FSNMNISTRY YDPSWWGRAE PIYITTCPRD SSSKEGSISN 360 LLFVNITIVS ENGVFLSGSP NGLLTDIKFK NMNITLRRWS NYTSGLVDYR PGCQGLMNHS 420 ATAGIIMEHV NGFSVENVDL KWSDDNLNAW NVPLEFRPST VNNVSFVGFS SGLLHEIV* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 1.0e-6 | 165 | 394 | 246 | + Probable polygalacturonase At3g15720 | ||
| PLN02218 | PLN02218 | 3.0e-8 | 41 | 394 | 387 | + polygalacturonase ADPG | ||
| PLN02188 | PLN02188 | 2.0e-8 | 178 | 253 | 76 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 4.0e-9 | 178 | 395 | 236 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 5.0e-41 | 40 | 321 | 315 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAB41176.1 | 0 | 21 | 477 | 15 | 474 | putative protein [Arabidopsis thaliana] |
| RefSeq | NP_567055.1 | 0 | 21 | 477 | 15 | 474 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002282920.1 | 0 | 16 | 472 | 13 | 465 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
| RefSeq | XP_002282925.1 | 0 | 16 | 472 | 13 | 460 | PREDICTED: hypothetical protein isoform 2 [Vitis vinifera] |
| RefSeq | XP_002322693.1 | 0 | 31 | 477 | 2 | 445 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2uvf_B | 2e-17 | 18 | 323 | 115 | 484 | A Chain A, Crystal Structure Of The Human Coup-Tfii Ligand Binding Domain |
| PDB | 2uvf_A | 2e-17 | 18 | 323 | 115 | 484 | A Chain A, Crystal Structure Of The Human Coup-Tfii Ligand Binding Domain |
| PDB | 2uve_B | 2e-17 | 18 | 323 | 115 | 484 | A Chain A, Structure Of Yersinia Enterocolitica Family 28 Exopolygalacturonase |
| PDB | 2uve_A | 2e-17 | 18 | 323 | 115 | 484 | A Chain A, Structure Of Yersinia Enterocolitica Family 28 Exopolygalacturonase |
| PDB | 3jur_D | 0.000000000000003 | 17 | 327 | 6 | 323 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
