| Basic Information | |
|---|---|
| Species | Citrus sinensis |
| Cazyme ID | orange1.1g038762m |
| Family | GH28 |
| Protein Properties | Length: 268 Molecular Weight: 29618.5 Isoelectric Point: 5.5489 |
| Chromosome | Chromosome/Scaffold: 00092 Start: 185552 End: 187301 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH28 | 51 | 268 | 2.70002e-41 |
| RFPPGEYLTATIRLKSHVTLNIHEDATLLGGPRIEDYPEESSRWYVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLV GFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAICPKTYTGPLYNLTATDSWIRTKSSAIKL GSASWFDFKALVFDNITI | |||
| Full Sequence |
|---|
| Protein Sequence Length: 268 Download |
| VQLLLLLSTT HIHIHSVIDF GAKGDGIHYD TAAIQSAIDA CPPGNKPCQV RFPPGEYLTA 60 TIRLKSHVTL NIHEDATLLG GPRIEDYPEE SSRWYVVLAE NATDVGITGG GVVDGQAMKF 120 VVTKNEIKNV MVSWNHTGAC SGDECRPRLV GFLGCRNVNV WNVRLREPAY WCLHIVRCDN 180 TFIRDMSIYG DFNTPNNDGI DIEDSNNTVI TRVQIDTGDD AICPKTYTGP LYNLTATDSW 240 IRTKSSAIKL GSASWFDFKA LVFDNITI |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 1.0e-7 | 133 | 222 | 92 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02218 | PLN02218 | 8.0e-9 | 17 | 222 | 209 | + polygalacturonase ADPG | ||
| pfam12708 | Pectate_lyase_3 | 5.0e-9 | 17 | 70 | 55 | + Pectate lyase superfamily protein. This family of proteins possesses a beta helical structure like Pectate lyase. This family is most closely related to glycosyl hydrolase family 28. | ||
| COG5434 | PGU1 | 8.0e-42 | 17 | 268 | 286 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAL38256.1 | 0 | 16 | 268 | 36 | 294 | putative protein [Arabidopsis thaliana] |
| RefSeq | NP_567055.1 | 0 | 16 | 268 | 36 | 294 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002282920.1 | 0 | 13 | 268 | 37 | 291 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
| RefSeq | XP_002322693.1 | 0 | 16 | 268 | 14 | 268 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002526753.1 | 0 | 16 | 268 | 42 | 293 | pentatricopeptide repeat-containing protein, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2uvf_B | 7e-19 | 13 | 257 | 155 | 449 | A Chain A, Plant Carboxylesterase Aecxe1 From Actinidia Eriantha With Acyl Adduct |
| PDB | 2uvf_A | 7e-19 | 13 | 257 | 155 | 449 | A Chain A, Plant Carboxylesterase Aecxe1 From Actinidia Eriantha With Acyl Adduct |
| PDB | 2uve_B | 7e-19 | 13 | 257 | 155 | 449 | A Chain A, Structure Of Yersinia Enterocolitica Family 28 Exopolygalacturonase |
| PDB | 2uve_A | 7e-19 | 13 | 257 | 155 | 449 | A Chain A, Structure Of Yersinia Enterocolitica Family 28 Exopolygalacturonase |
| PDB | 3jur_D | 9e-18 | 16 | 226 | 29 | 267 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
 | ||||
| Hit | Length | Start | End | EValue |
| DY303011 | 252 | 17 | 268 | 0 |
| DY281273 | 252 | 17 | 268 | 0 |
| FC887560 | 252 | 17 | 268 | 0 |
| FC907433 | 251 | 17 | 267 | 0 |
| DY286856 | 252 | 17 | 268 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
| Phylogeny |
|---|
 |