| Basic Information | |
|---|---|
| Species | Physcomitrella patens |
| Cazyme ID | Pp1s116_9V6.1 |
| Family | GH28 |
| Protein Properties | Length: 497 Molecular Weight: 54771 Isoelectric Point: 6.6505 |
| Chromosome | Chromosome/Scaffold: 116 Start: 59752 End: 61544 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 92 | 421 | 0 |
| DHCAEQGGGVVHIPPGTYLTGTIHLRSNITLWVEEGATIMGSTRQEDFAPESARWYTILAEGADNVELTGGGIVTGQGLNFVVEFKEEKNIMVSWNVTGD CLGDECRPRLVGFINCKNVHIWNVRLQEPAYWCLHLVNSDTISIHNVSIHGDFNSPNTDGIDIESSNNTLITHCHIDTGDDAICPKTADGPLCNLTVTHS WIRTKSCAVKLGSRTNHDLRNLHFEHLVIVDSHRGLGIQLRDEGNVDNVTYANIQMSTRYYHPSWWGLAEPIYVTACPRTPKTVVGSIQNIHYINITTTS ENGIFLSSLGGRNLKGMKFRNVNVTLERTT | |||
| Full Sequence |
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| Protein Sequence Length: 497 Download |
| MLRSLSLGTL ISGFDCGMGH SNGENPPPGL VCKFVGLVLG VLMIAVPVSS SRPDFQALKV 60 AENGRRVCRV TRFGATGNGR VYDTIPIQSC IDHCAEQGGG VVHIPPGTYL TGTIHLRSNI 120 TLWVEEGATI MGSTRQEDFA PESARWYTIL AEGADNVELT GGGIVTGQGL NFVVEFKEEK 180 NIMVSWNVTG DCLGDECRPR LVGFINCKNV HIWNVRLQEP AYWCLHLVNS DTISIHNVSI 240 HGDFNSPNTD GIDIESSNNT LITHCHIDTG DDAICPKTAD GPLCNLTVTH SWIRTKSCAV 300 KLGSRTNHDL RNLHFEHLVI VDSHRGLGIQ LRDEGNVDNV TYANIQMSTR YYHPSWWGLA 360 EPIYVTACPR TPKTVVGSIQ NIHYINITTT SENGIFLSSL GGRNLKGMKF RNVNVTLERT 420 TNYSGGHHDY RPGCEGMVPH RMSATFLENV DDLRMQGVIV RWKTARVWDW GLPFDFAAGT 480 TVRGMHLQDY ESSHLD* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam12708 | Pectate_lyase_3 | 2.0e-12 | 70 | 274 | 208 | + Pectate lyase superfamily protein. This family of proteins possesses a beta helical structure like Pectate lyase. This family is most closely related to glycosyl hydrolase family 28. | ||
| PLN02218 | PLN02218 | 7.0e-13 | 70 | 274 | 216 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 6.0e-14 | 94 | 416 | 346 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 6.0e-15 | 37 | 274 | 247 | + polygalacturonase/glycoside hydrolase family protein | ||
| COG5434 | PGU1 | 5.0e-51 | 70 | 348 | 313 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
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| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | XP_001769606.1 | 0 | 70 | 480 | 1 | 411 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_001783745.1 | 0 | 52 | 494 | 16 | 458 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_002282920.1 | 0 | 70 | 492 | 41 | 464 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
| RefSeq | XP_002322693.1 | 0 | 70 | 493 | 15 | 440 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002462564.1 | 0 | 66 | 492 | 31 | 458 | hypothetical protein SORBIDRAFT_02g028280 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 1e-25 | 66 | 344 | 26 | 345 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 1e-25 | 66 | 344 | 26 | 345 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 1e-25 | 66 | 344 | 26 | 345 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 1e-25 | 66 | 344 | 26 | 345 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 2uvf_B | 0.000000000000002 | 66 | 347 | 155 | 487 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| BY947723 | 252 | 1 | 252 | 0 |
| FC445877 | 209 | 289 | 497 | 0 |
| CJ975644 | 212 | 32 | 243 | 0 |
| FC434668 | 191 | 307 | 497 | 0 |
| DY982615 | 299 | 142 | 440 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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