| Basic Information | |
|---|---|
| Species | Chlamydomonas reinhardtii |
| Cazyme ID | Cre12.g556350.t1.3 |
| Family | GH28 |
| Protein Properties | Length: 859 Molecular Weight: 88861.3 Isoelectric Point: 8.8575 |
| Chromosome | Chromosome/Scaffold: 12 Start: 7451058 End: 7455179 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH28 | 42 | 428 | 0 |
| DTVLQASAERSSYGRTQHTWYLLYFLGCRNCSLSGGGTVRGCAEAFMPPQLPPQPQPQAPLPAADAGSAGTAGSGHVEDTSGMDVSNWADPSCRVRRQCR PRLVGLVGCEHVALSDVALADSAFWTLHVRRSRHVELSGLRVSGNRRFPNNDGIDIDGSAHVTIRNCTVSTADDAVCLKTTLGQAERDPDPGLRALEASA AKAAKAAAGCKGQGRSQDNGNRSSSSSSSGDGGGNEACGQALRLPPPRATEHVLVEDCVLRSRSAAVKLGSESRADMTNITFRRVRVLDSNRGLGIQLRD WGDVRDVAFEDVSVTTSRVTAGRWWGGGEPIYVTALPRHLDAWGRVGQLRNVSFRRVAATATGGLVVVAGSPESVVRGVTLQDVTLR | |||
| Full Sequence |
|---|
| Protein Sequence Length: 859 Download |
| MARAVMAQRW TQQLYILFAP GRTYLLGSLL LSGSVQLVVP ADTVLQASAE RSSYGRTQHT 60 WYLLYFLGCR NCSLSGGGTV RGCAEAFMPP QLPPQPQPQA PLPAADAGSA GTAGSGHVED 120 TSGMDVSNWA DPSCRVRRQC RPRLVGLVGC EHVALSDVAL ADSAFWTLHV RRSRHVELSG 180 LRVSGNRRFP NNDGIDIDGS AHVTIRNCTV STADDAVCLK TTLGQAERDP DPGLRALEAS 240 AAKAAKAAAG CKGQGRSQDN GNRSSSSSSS GDGGGNEACG QALRLPPPRA TEHVLVEDCV 300 LRSRSAAVKL GSESRADMTN ITFRRVRVLD SNRGLGIQLR DWGDVRDVAF EDVSVTTSRV 360 TAGRWWGGGE PIYVTALPRH LDAWGRVGQL RNVSFRRVAA TATGGLVVVA GSPESVVRGV 420 TLQDVTLRIL PPPPAPHQPP LALAIAAAAA AAVPGSPAAV QGPRGALEAA GAKEKAGGNA 480 QGASLLGQAA GVRATTPAAG RRRLLELVTA AAGQQRPDRS AGHDTAAGAA SANAAAAAAA 540 DGGAQRGSGD GHAGTDVAGD ATDWPLGVKL DLRPGPYDVR RWPLSAAGPV LAQYVQGMAM 600 WDVDIQLVAP APGHGAEGQA GSEDGQPWPA PPPPPRSWVT GWLDWWLARP PPWCVELVAR 660 TVHGLQARGV RVRVVHADEA SGELPVPDAS DAGAPGARGY RPDHSWLQGR GTATGALWLV 720 VPTVMLAVVA ITACIGVGLT QWPRRRQARM QPLPTTDSDE GFGLVAMSGG RSMAGAGSSE 780 DIASASVWAA AAAAGGAPVA AAAAPPLPPL PPTGLRSLCL ERSRALGSSE SLSKKTSATL 840 RTWSPKVMPK ESYPTEGV* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5434 | PGU1 | 7.0e-5 | 288 | 353 | 68 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| PLN02188 | PLN02188 | 6.0e-7 | 123 | 225 | 105 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN03003 | PLN03003 | 5.0e-9 | 141 | 221 | 81 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-9 | 129 | 221 | 95 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 1.0e-13 | 141 | 221 | 81 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | XP_001694178.1 | 0 | 16 | 434 | 21 | 367 | predicted protein [Chlamydomonas reinhardtii] |
| RefSeq | XP_001694178.1 | 0 | 597 | 786 | 352 | 541 | predicted protein [Chlamydomonas reinhardtii] |
| RefSeq | ZP_03013960.1 | 2e-29 | 16 | 427 | 63 | 397 | hypothetical protein BACINT_01520 [Bacteroides intestinalis DSM 17393] |
| RefSeq | ZP_05253998.1 | 2e-29 | 16 | 431 | 63 | 401 | glycoside hydrolase [Bacteroides sp. 4_3_47FAA] |
| RefSeq | ZP_05553838.1 | 3e-32 | 16 | 432 | 41 | 368 | conserved hypothetical protein [Lactobacillus coleohominis 101-4-CHN] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 0.00000002 | 17 | 221 | 62 | 267 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 0.00000002 | 17 | 221 | 62 | 267 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 0.00000002 | 17 | 221 | 62 | 267 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 0.00000002 | 17 | 221 | 62 | 267 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
