| Basic Information | |
|---|---|
| Species | Linum usitatissimum |
| Cazyme ID | Lus10042350 |
| Family | GH28 |
| Protein Properties | Length: 414 Molecular Weight: 45159.9 Isoelectric Point: 5.3233 |
| Chromosome | Chromosome/Scaffold: 123 Start: 1786240 End: 1788702 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH28 | 67 | 328 | 0 |
| SPSSCSSSTCYVTFPPGTYLTATIHLKSNVILDIQPGAVLLGGPRVEDYPKQSSRWYVVLAENCTDVGITGGGSVDGNGPMFVERYNSVKNVMVSWNATG DCLGDECRPRLVGFLGCTNVRVWNVNFTQPAYWCFHLVRCSNSLIHDVSIYGDFNTPNNDGIDIEDSNNTVITRCHIDTGDDAICPKTYTGPLYNLTVTD CWIQTKSSAIKLGSASWFDFKGLVFDNITIVDSHRGLGFQIRDGGCKGGKLSNLRFTNVKLT | |||
| Full Sequence |
|---|
| Protein Sequence Length: 414 Download |
| MPTLLLYSII LHFILPATSS SSSLPPAIQL PHPPSPTTAV YVTDYGATGD GAHYDTYAIQ 60 SAIDSCSPSS CSSSTCYVTF PPGTYLTATI HLKSNVILDI QPGAVLLGGP RVEDYPKQSS 120 RWYVVLAENC TDVGITGGGS VDGNGPMFVE RYNSVKNVMV SWNATGDCLG DECRPRLVGF 180 LGCTNVRVWN VNFTQPAYWC FHLVRCSNSL IHDVSIYGDF NTPNNDGIDI EDSNNTVITR 240 CHIDTGDDAI CPKTYTGPLY NLTVTDCWIQ TKSSAIKLGS ASWFDFKGLV FDNITIVDSH 300 RGLGFQIRDG GCKGGKLSNL RFTNVKLTYR RWTNFKGGLV DYRPGCQGLV KHGAAGMIME 360 HVQGLEVENV SMTWSGGEVA EEEWDNPLEF RPSTVNNVSF LNFHSGMYYD AAL* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 8.0e-11 | 32 | 250 | 239 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 4.0e-11 | 127 | 328 | 208 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 4.0e-12 | 1 | 327 | 349 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 5.0e-13 | 35 | 327 | 303 | + polygalacturonase ADPG | ||
| COG5434 | PGU1 | 4.0e-51 | 31 | 327 | 329 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAB41176.1 | 0 | 19 | 408 | 17 | 471 | putative protein [Arabidopsis thaliana] |
| RefSeq | NP_567055.1 | 0 | 19 | 408 | 17 | 471 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002282920.1 | 0 | 6 | 406 | 5 | 465 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
| RefSeq | XP_002322693.1 | 0 | 28 | 408 | 3 | 442 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002526753.1 | 0 | 1 | 396 | 1 | 403 | pentatricopeptide repeat-containing protein, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 2e-21 | 32 | 324 | 20 | 345 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 2e-21 | 32 | 324 | 20 | 345 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 2e-21 | 32 | 324 | 20 | 345 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 2e-21 | 32 | 324 | 20 | 345 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 2uvf_B | 4e-19 | 40 | 324 | 157 | 484 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
