Basic Information | |
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Species | Citrus clementina |
Cazyme ID | Ciclev10023501m |
Family | GH35 |
Protein Properties | Length: 799 Molecular Weight: 88893.4 Isoelectric Point: 6.6888 |
Chromosome | Chromosome/Scaffold: 3 Start: 19286089 End: 19293764 |
Description | beta-galactosidase 16 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH35 | 17 | 321 | 0 |
LIINGERKVLFSGSIHYPRSPREMWPSLISKAKEGGLDVIQTYVFWNLHEPETGKYDFSGRRDLVRFIKEIQALGLYASIRIGPFIQSEWSYGGLPFWLH DVPGITFRCDNEPFKAFMQNFTTKIVNMMKSERLYASQGGPIILSQIENEYQMVENAFGERGPPYIKWAAEMAVGLQTGVPWVMCKQDDAPDPVINACNG RKCGETFKGPNSPNKPSIWTENWTSRYQAYGEDPIGRTADDIAFHVALWVARNGSFVNYYMYHGGTNFGREASAFVTASYYDDAPLDEYGMINQPKWGHL KELHA |
Full Sequence |
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Protein Sequence Length: 799 Download |
MSGGVRGGEV TYDGRSLIIN GERKVLFSGS IHYPRSPREM WPSLISKAKE GGLDVIQTYV 60 FWNLHEPETG KYDFSGRRDL VRFIKEIQAL GLYASIRIGP FIQSEWSYGG LPFWLHDVPG 120 ITFRCDNEPF KAFMQNFTTK IVNMMKSERL YASQGGPIIL SQIENEYQMV ENAFGERGPP 180 YIKWAAEMAV GLQTGVPWVM CKQDDAPDPV INACNGRKCG ETFKGPNSPN KPSIWTENWT 240 SRYQAYGEDP IGRTADDIAF HVALWVARNG SFVNYYMYHG GTNFGREASA FVTASYYDDA 300 PLDEYGMINQ PKWGHLKELH AAIKLCSNTL LLGKAMTPLQ LGPKQEAYLF AENSSEECAS 360 AFLVNKDKQN VDVVFQNSSY KLLANSISIL PDCRNVIFNT AEVKTQTNTR TRIPIMYFNV 420 SDQWEEFKEP IPNFEDTSLK SDTLLEHTDT TKDTSDYLWY SFSFQHEPSD TRAQLSVHSL 480 GHVLHAFVNG VPVGSAHGSY KNTSFTLQTD FSLSNGINNV SLLSVMVGLP DSGAYLERKR 540 YGPVAVSIQN KEGSMNFTNY KWGQKVGLLG ENLQIYTDEG SKIIQWSKLS SLDISPPLTW 600 YKTAFDATGE DEHVALNVNG MRKGEAWVNG QSFGRYWPSL RTPRGEPSQI SYNIPRSFLK 660 PTGNLLVLLE EEGGDPLSIT LEKVVIDSVC GKARASPYRH YNGSREAKLV HLQCAPNGYI 720 TKILFASYGT PFGGCGRDGH AIGYCDSPNS KFAAEKACLG KRSCLIPASD QFFDGDPCPS 780 KKKSLIVEAH CGPISIMG* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam02449 | Glyco_hydro_42 | 4.0e-5 | 37 | 94 | 59 | + Beta-galactosidase. This group of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. The enzyme catalyzes the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues. | ||
pfam02140 | Gal_Lectin | 6.0e-20 | 712 | 791 | 81 | + Galactose binding lectin domain. | ||
COG1874 | LacA | 1.0e-21 | 10 | 167 | 169 | + Beta-galactosidase [Carbohydrate transport and metabolism] | ||
pfam01301 | Glyco_hydro_35 | 3.0e-147 | 16 | 323 | 322 | + Glycosyl hydrolases family 35. | ||
PLN03059 | PLN03059 | 0 | 10 | 791 | 822 | + beta-galactosidase; Provisional |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005529 | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates." [CHEBI:16646, GOC:mah] |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI18990.1 | 0 | 5 | 791 | 23 | 816 | unnamed protein product [Vitis vinifera] |
EMBL | CBI18991.1 | 0 | 11 | 791 | 33 | 820 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002284529.1 | 0 | 11 | 791 | 25 | 812 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002306647.1 | 0 | 10 | 791 | 2 | 763 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002521778.1 | 0 | 2 | 791 | 16 | 827 | beta-galactosidase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3d3a_A | 1.00053e-42 | 16 | 319 | 14 | 325 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
PDB | 3thd_D | 3e-30 | 6 | 310 | 7 | 322 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
PDB | 3thd_C | 3e-30 | 6 | 310 | 7 | 322 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO778160 | 710 | 10 | 688 | 0 |
HO780602 | 591 | 60 | 638 | 0 |
HO795552 | 532 | 100 | 619 | 0 |
HO795552 | 54 | 8 | 61 | 0 |
HO795552 | 40 | 61 | 100 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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