Basic Information | |
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Species | Cucumis sativus |
Cazyme ID | Cucsa.260200.1 |
Family | PL4 |
Protein Properties | Length: 407 Molecular Weight: 46199.8 Isoelectric Point: 4.6907 |
Chromosome | Chromosome/Scaffold: 02229 Start: 6514178 End: 6517105 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 1 | 389 | 0 |
MITPSDEFRVAGPVKQDLTSHAGPITLSMFVSTHYAGKDIGMRFAAGEPWKKVFGPVFVYLNSVSPEEDSLSLWEDAKQQLAIEINEWPYTFPQSEDFPS SAQRGSVAGQLFVRDRYISSRLMRASNAFVGLALPGPVGSWQAETKGYQFWTQADNHGNFLINNIRVGVYNLYAFVPGFIGDYKYEANITIEFGSEINLD EMVFDPPRQGPTIWEIGFPDRTAAEFYVPDPYPTLMNKLYNNHADKFRQYGLWERYAAIYPNNDLVFTVGVDDYKVDWFYAHVNRNMGNQTYEATTWEIR FLLQPVNQTTNYTLQIALASAAECELQVRLNNRESEQPGFSTGRIGKDNAIARHGIHGLYWLYSIPFPGDQFLQGNNSIYLTQARSESP |
Full Sequence |
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Protein Sequence Length: 407 Download |
MITPSDEFRV AGPVKQDLTS HAGPITLSMF VSTHYAGKDI GMRFAAGEPW KKVFGPVFVY 60 LNSVSPEEDS LSLWEDAKQQ LAIEINEWPY TFPQSEDFPS SAQRGSVAGQ LFVRDRYISS 120 RLMRASNAFV GLALPGPVGS WQAETKGYQF WTQADNHGNF LINNIRVGVY NLYAFVPGFI 180 GDYKYEANIT IEFGSEINLD EMVFDPPRQG PTIWEIGFPD RTAAEFYVPD PYPTLMNKLY 240 NNHADKFRQY GLWERYAAIY PNNDLVFTVG VDDYKVDWFY AHVNRNMGNQ TYEATTWEIR 300 FLLQPVNQTT NYTLQIALAS AAECELQVRL NNRESEQPGF STGRIGKDNA IARHGIHGLY 360 WLYSIPFPGD QFLQGNNSIY LTQARSESPF EGLMYDYIRL EAPSLT* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd10320 | RGL4_N | 5.0e-22 | 1 | 70 | 70 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10316 | RGL4_M | 1.0e-29 | 103 | 199 | 97 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 2.0e-51 | 214 | 401 | 190 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_179847.1 | 0 | 1 | 406 | 272 | 677 | lyase [Arabidopsis thaliana] |
RefSeq | XP_002308510.1 | 0 | 1 | 406 | 269 | 674 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002319997.1 | 0 | 1 | 406 | 213 | 620 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527229.1 | 0 | 1 | 404 | 266 | 668 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527245.1 | 0 | 1 | 406 | 214 | 621 | lyase, putative [Ricinus communis] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DY969340 | 321 | 2 | 321 | 0 |
EH792178 | 309 | 58 | 360 | 0 |
EV572092 | 274 | 28 | 297 | 0 |
GO374104 | 368 | 44 | 404 | 0 |
GO374104 | 120 | 33 | 150 | 0.48 |
Sequence Alignments (This image is cropped. Click for full image.) |
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