Basic Information | |
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Species | Picea abies |
Cazyme ID | MA_10429122g0010 |
Family | PL4 |
Protein Properties | Length: 259 Molecular Weight: 29214.1 Isoelectric Point: 4.4344 |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 7 | 248 | 0 |
NLSIYTSHVVLDNGIVKVTLSKPQGTVTGIEYGGIDNMMETLNLESHRGYWDLNWSEPGGPLLSDSEFSVAVETEDQVEVSFVRNWDPSLQGTTQIPLNI DIRYVLLSGYSGFYVYAIYERPTGFPDCDLVKIRMVFRFEYMAIADNKQRVMPMEDDRSPARCRTLAYPEAVLLTNPKNPELKGEVDDKYQYSLDNKDGG VYGWVSFDPMVGFWINFPSHEYRSGGPTKQSLTLHAGPICLV |
Full Sequence |
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Protein Sequence Length: 259 Download |
MEPSNVNLSI YTSHVVLDNG IVKVTLSKPQ GTVTGIEYGG IDNMMETLNL ESHRGYWDLN 60 WSEPGGPLLS DSEFSVAVET EDQVEVSFVR NWDPSLQGTT QIPLNIDIRY VLLSGYSGFY 120 VYAIYERPTG FPDCDLVKIR MVFRFEYMAI ADNKQRVMPM EDDRSPARCR TLAYPEAVLL 180 TNPKNPELKG EVDDKYQYSL DNKDGGVYGW VSFDPMVGFW INFPSHEYRS GGPTKQSLTL 240 HAGPICLVVS ILNIYSILL |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd10320 | RGL4_N | 9.0e-49 | 13 | 247 | 250 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 1.0e-74 | 1 | 192 | 201 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_172462.2 | 0 | 1 | 249 | 44 | 300 | lyase [Arabidopsis thaliana] |
RefSeq | XP_002306520.1 | 0 | 17 | 249 | 1 | 241 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002317123.1 | 0 | 1 | 249 | 1 | 257 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527352.1 | 0 | 1 | 249 | 1 | 257 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527353.1 | 0 | 1 | 256 | 1 | 267 | lyase, putative [Ricinus communis] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DT631325 | 197 | 1 | 188 | 0 |
DR682760 | 188 | 1 | 179 | 0 |
CO198065 | 238 | 13 | 241 | 0 |
GO266963 | 264 | 1 | 255 | 0 |
JG601045 | 268 | 1 | 256 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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