Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr8g068120.1 |
Family | PL4 |
Protein Properties | Length: 695 Molecular Weight: 79503.9 Isoelectric Point: 7.162 |
Chromosome | Chromosome/Scaffold: 8 Start: 17488580 End: 17495982 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 80 | 676 | 0 |
LVVDNGIVSVSMARPEGYILGISYNGIDNVLDSENQELDRGYFDVVWNEPGEQNLSKSTFQRIHGTNFSVIAADENMVEVSFSRLWTHSMSGKNVPINID IRYIFRSGDSGFYSYAIFNRPKGMPGIEVDQIRFVFKLDKDRFKYMAISDTRQRNMPAMKDRNTGQVLAYPEAVLLTNPINPQFRGEVDTFHGWIGFDSD PPVGFWMITPSNEFRNGGPIKQDLTSHVGPIALSMFVSTHYAGKEVTMAFQEGETYKKVFGPVFVYLNTASSENDNATLWSDAVQQLSKEVQSWPYDFPQ SQDYFPPNQRGAVFGRLLVQDWYFEGGRYQYANNAYVGLALPGDAGSWQRESKGYQFWTQTDAKGYFKITNVVPGHYNLFGWVSGFIGDYKYNSTITITP GGVIKLNSLVYNPPRNGPTIWEIGIPDRLTSEFHVPEPYPTLMNKLYTEGRDNFRQYGLWERYTEMYPTDDLIYTLGVNKNKDWFYAHVTRNTENNTYEP TTWQIIFEHQHDLKSGNYTLQLALASAADAYLQVRFNDRSVYPPHFATGHIGRIRGDNCIQRHGIHGLYRLFSIDVPSNLLLKGKNIIYLTQTNADT |
Full Sequence |
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Protein Sequence Length: 695 Download |
MKYYVVVAHE HNPLMKVLSK KNKHVILYWW FGMIVQFCFL LCVCAEKTSL RGGINSLKSK 60 SIVKLNTQDK HKVILADFLL VVDNGIVSVS MARPEGYILG ISYNGIDNVL DSENQELDRG 120 YFDVVWNEPG EQNLSKSTFQ RIHGTNFSVI AADENMVEVS FSRLWTHSMS GKNVPINIDI 180 RYIFRSGDSG FYSYAIFNRP KGMPGIEVDQ IRFVFKLDKD RFKYMAISDT RQRNMPAMKD 240 RNTGQVLAYP EAVLLTNPIN PQFRGEVDTF HGWIGFDSDP PVGFWMITPS NEFRNGGPIK 300 QDLTSHVGPI ALSMFVSTHY AGKEVTMAFQ EGETYKKVFG PVFVYLNTAS SENDNATLWS 360 DAVQQLSKEV QSWPYDFPQS QDYFPPNQRG AVFGRLLVQD WYFEGGRYQY ANNAYVGLAL 420 PGDAGSWQRE SKGYQFWTQT DAKGYFKITN VVPGHYNLFG WVSGFIGDYK YNSTITITPG 480 GVIKLNSLVY NPPRNGPTIW EIGIPDRLTS EFHVPEPYPT LMNKLYTEGR DNFRQYGLWE 540 RYTEMYPTDD LIYTLGVNKN KDWFYAHVTR NTENNTYEPT TWQIIFEHQH DLKSGNYTLQ 600 LALASAADAY LQVRFNDRSV YPPHFATGHI GRIRGDNCIQ RHGIHGLYRL FSIDVPSNLL 660 LKGKNIIYLT QTNADTPFQG VMYDYIRLEQ PPSN* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam13620 | CarboxypepD_reg | 0.005 | 428 | 486 | 59 | + Carboxypeptidase regulatory-like domain. | ||
cd10316 | RGL4_M | 3.0e-31 | 388 | 488 | 101 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 5.0e-42 | 500 | 689 | 192 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 1.0e-63 | 72 | 354 | 297 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 2.0e-74 | 60 | 267 | 210 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAS99719.1 | 0 | 80 | 691 | 62 | 674 | At2g22620 [Arabidopsis thaliana] |
RefSeq | NP_179847.1 | 0 | 80 | 691 | 62 | 674 | lyase [Arabidopsis thaliana] |
RefSeq | XP_002308510.1 | 0 | 14 | 691 | 1 | 671 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527229.1 | 0 | 35 | 691 | 18 | 667 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527245.1 | 0 | 79 | 691 | 1 | 618 | lyase, putative [Ricinus communis] |