Basic Information | |
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Species | Carica papaya |
Cazyme ID | evm.model.supercontig_152.24 |
Family | PL4 |
Protein Properties | Length: 638 Molecular Weight: 71917.6 Isoelectric Point: 7.0352 |
Chromosome | Chromosome/Scaffold: 152 Start: 179970 End: 183863 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 2 | 612 | 0 |
AKKKVKLITKGSQVTLDNGLVRLTISKPQGYITAIKYAGVDNLLDLKSSESSRGYWDINWSLPGGKDRYQLLSGAEYSVVQMNSDRVEVSFKNTYDPAAE GIKLPLTVDTRYVLQSGVSGFHCYAIYERPPNCRAFDLAQTRMVFKLRQEKFHYMAITDEKQRIMPMPEDLLPGRGKQLIVPESVLLVNPINPDLKGEVD DKYQYSVDNKDGGVHGWISSGPIVGFWVIFPSHEFRNGGPTKQNLTVHTGPACLAMFHGTHYIGEVILAHFEEGETWRKVFGPFFVYLNSTSNVSDAYNL WLDAKKQRLQEEMAWPYDFISSPYYLSANERGSAIGKLVVLDRFILSSLIPAKNAYIGLSTATEEGGWQTESKDYQFWVKTDSQGNFIIKNAIPGVYRLH GWVPGFVGDYLDTRLVTISAGSQTELSHLTFKPPRDGPTIWEIGFPDRTAMGFYVPDVNPMYVNRLFLNGPEKYRQYGLWDRYTDIHPESDQVFSIGISD SKKEWFFAHVDRRGADKYQPTTWTIKFNLDSVTNGTYKLRLAIASATRSDLQVFVNSKDEGMVFEVMNLGNDNTICRHGIHGLYRLFSIDVSSSLLIKGD NSIFLTQARGG |
Full Sequence |
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Protein Sequence Length: 638 Download |
MAKKKVKLIT KGSQVTLDNG LVRLTISKPQ GYITAIKYAG VDNLLDLKSS ESSRGYWDIN 60 WSLPGGKDRY QLLSGAEYSV VQMNSDRVEV SFKNTYDPAA EGIKLPLTVD TRYVLQSGVS 120 GFHCYAIYER PPNCRAFDLA QTRMVFKLRQ EKFHYMAITD EKQRIMPMPE DLLPGRGKQL 180 IVPESVLLVN PINPDLKGEV DDKYQYSVDN KDGGVHGWIS SGPIVGFWVI FPSHEFRNGG 240 PTKQNLTVHT GPACLAMFHG THYIGEVILA HFEEGETWRK VFGPFFVYLN STSNVSDAYN 300 LWLDAKKQRL QEEMAWPYDF ISSPYYLSAN ERGSAIGKLV VLDRFILSSL IPAKNAYIGL 360 STATEEGGWQ TESKDYQFWV KTDSQGNFII KNAIPGVYRL HGWVPGFVGD YLDTRLVTIS 420 AGSQTELSHL TFKPPRDGPT IWEIGFPDRT AMGFYVPDVN PMYVNRLFLN GPEKYRQYGL 480 WDRYTDIHPE SDQVFSIGIS DSKKEWFFAH VDRRGADKYQ PTTWTIKFNL DSVTNGTYKL 540 RLAIASATRS DLQVFVNSKD EGMVFEVMNL GNDNTICRHG IHGLYRLFSI DVSSSLLIKG 600 DNSIFLTQAR GGDALCAILY DYLRLEAPSS KSKSSEE* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd10316 | RGL4_M | 2.0e-23 | 331 | 427 | 97 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 3.0e-45 | 442 | 626 | 188 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 5.0e-68 | 10 | 200 | 191 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
cd10320 | RGL4_N | 9.0e-69 | 6 | 298 | 300 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI23231.1 | 0 | 17 | 630 | 2 | 617 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_172460.6 | 0 | 17 | 629 | 1 | 617 | lyase [Arabidopsis thaliana] |
RefSeq | XP_001769727.1 | 0 | 14 | 634 | 3 | 626 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_002285626.1 | 0 | 17 | 637 | 1 | 624 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
RefSeq | XP_002317123.1 | 0 | 1 | 637 | 1 | 638 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nkg_A | 0.008 | 377 | 625 | 283 | 506 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus |
PDB | 3njx_A | 0.008 | 377 | 625 | 283 | 506 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus Mutant H210a |
PDB | 3njv_A | 0.008 | 377 | 625 | 283 | 506 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus Mutant H210a |
PDB | 2xhn_B | 0.008 | 377 | 625 | 283 | 506 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus K150a Active Site Mutant |
PDB | 2xhn_A | 0.008 | 377 | 625 | 283 | 506 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus K150a Active Site Mutant |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GE473226 | 288 | 186 | 473 | 0 |
DV995349 | 288 | 186 | 473 | 0 |
CO473731 | 278 | 186 | 463 | 0 |
CO474992 | 282 | 236 | 517 | 0 |
GW864372 | 311 | 144 | 454 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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