Basic Information | |
---|---|
Species | Phaseolus vulgaris |
Cazyme ID | Phvul.003G287200.1 |
Family | PL4 |
Protein Properties | Length: 702 Molecular Weight: 80019.5 Isoelectric Point: 9.0024 |
Chromosome | Chromosome/Scaffold: 03 Start: 51313075 End: 51318258 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
PL4 | 71 | 679 | 0 |
NTKKRQQLVVDNGIVSVKFSRPEGYILQMSYKGINNILADENEEQDRGYLDVVWNTPGKSSNFQRIVGTNFSVIAADENMVELSFSRTWTSSMNGSSVPM NIDIRYILRSGDSGFYSYAIFDRPEGWPAVEIDQIRIVFKLKKSRFNYMAMADDRQRKMPTKRDRETGQILAYPEAVLLTRPVNPEFRGEVDDKYQYSCE NKDNTVHGWVSDDGNAPVGFWMITPSNEFRNAGPIKQDLTSHVGPITLQMFVSTHYAGKEVTMAFQEGEAYKKVFGPVFAYVNSASREDGTLSLWSDAVQ QQAKEVRNWPYEFPKSEDFVPPSQRGIVLGRLLVKDSYFRGGRLLYANNAYVGLALPGDTGSWQTESKGYQFWTQADTKGFFLINNIVPGDYNLYAWVPG FIGDYRYNVTITVSKGGVITLDSLVYVPPRSGPTIWEIGFPDRTAAEFYVPDPYPTLMNKLYNEQHSDKFRQYGLWERYTDLYPNDDLVYTVGVSNYNKD WFYAHVTRNAGNKTYQPTTWQIIFEHPDQIVRGNYTLQLALACTNDADLQVRFNDPGADPPDFASGKIGGDSAIARHGLHGLHRLFSINVPSDRILKGTN TIYLKQSRA |
Full Sequence |
---|
Protein Sequence Length: 702 Download |
MKGRVVRKRS KRFFLLCWLG LTLRLVFLLG ASSEKTSFRF LFACMPFISR RTLRESNPSQ 60 WTSSNSTVIL NTKKRQQLVV DNGIVSVKFS RPEGYILQMS YKGINNILAD ENEEQDRGYL 120 DVVWNTPGKS SNFQRIVGTN FSVIAADENM VELSFSRTWT SSMNGSSVPM NIDIRYILRS 180 GDSGFYSYAI FDRPEGWPAV EIDQIRIVFK LKKSRFNYMA MADDRQRKMP TKRDRETGQI 240 LAYPEAVLLT RPVNPEFRGE VDDKYQYSCE NKDNTVHGWV SDDGNAPVGF WMITPSNEFR 300 NAGPIKQDLT SHVGPITLQM FVSTHYAGKE VTMAFQEGEA YKKVFGPVFA YVNSASREDG 360 TLSLWSDAVQ QQAKEVRNWP YEFPKSEDFV PPSQRGIVLG RLLVKDSYFR GGRLLYANNA 420 YVGLALPGDT GSWQTESKGY QFWTQADTKG FFLINNIVPG DYNLYAWVPG FIGDYRYNVT 480 ITVSKGGVIT LDSLVYVPPR SGPTIWEIGF PDRTAAEFYV PDPYPTLMNK LYNEQHSDKF 540 RQYGLWERYT DLYPNDDLVY TVGVSNYNKD WFYAHVTRNA GNKTYQPTTW QIIFEHPDQI 600 VRGNYTLQLA LACTNDADLQ VRFNDPGADP PDFASGKIGG DSAIARHGLH GLHRLFSINV 660 PSDRILKGTN TIYLKQSRAR NPFQGVMYDY IRLERPPLTL I* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd10316 | RGL4_M | 4.0e-29 | 394 | 494 | 101 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 1.0e-45 | 506 | 694 | 190 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 3.0e-72 | 77 | 356 | 286 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 5.0e-76 | 77 | 261 | 187 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAS99719.1 | 0 | 67 | 696 | 51 | 674 | At2g22620 [Arabidopsis thaliana] |
RefSeq | NP_179847.1 | 0 | 67 | 696 | 51 | 674 | lyase [Arabidopsis thaliana] |
RefSeq | XP_002308510.1 | 0 | 38 | 696 | 24 | 671 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002319997.1 | 0 | 78 | 699 | 1 | 620 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527245.1 | 0 | 78 | 699 | 2 | 621 | lyase, putative [Ricinus communis] |