| APIS family ID | APIS006 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | RecBCD | |||||||||||||
| CLAN ID | CLAN005 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | Silas et al., 2023 | |||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | PF08281.15 | |||||||||||||
| Phrog | phrog_323 | |||||||||||||
| Host taxa | d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella; | |||||||||||||
| Gene Location | Start: 7155; End: 7439; Strand: - | |||||||||||||
| Description | Trigger programmed cell death (PCD) by P4 prophage. | |||||||||||||
| Genome accession | Start | End | Strand | Protein ID | Length | Molecular weight | Charge | Isoelectric point | Function | Phrog | PFAM |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MH370387.1 | 5267 | 5911 | - | AXC42620.1 | 214 | 24343.32 | -15.0 | 4.3715 | hypothetical protein | phrog_6389 ; phrog_368 ; phrog_7704 ; phrog_34708 ; phrog_250 ; phrog_11761 ; phrog_60 ; phrog_5585 ; phrog_12449 ; phrog_8171 ; phrog_38306 ; phrog_19550 ; phrog_4029 ; phrog_1138 ; phrog_15198 ; phrog_924 ; phrog_19118 ; phrog_1667 ; phrog_24004 ; phrog_20344 ; phrog_14804 | PF13935.9 ;PF04448.15 |
| MH370387.1 | 5898 | 6131 | - | AXC42621.1 | 77 | 8340.16 | -1.0 | 5.6094 | hypothetical protein | phrog_599 | PF14354.9 |
| MH370387.1 | 6128 | 6637 | - | AXC42622.1 | 169 | 18732.04 | -11.0 | 4.4490 | eae protein | phrog_12050 ; phrog_368 ; phrog_492 ; phrog_583 ; phrog_614 ; phrog_27745 ; phrog_26126 | |
| MH370387.1 | 6634 | 6804 | - | AXC42623.1 | 56 | 6649.78 | 6.5 | 10.9928 | hypothetical protein | phrog_4684 ; phrog_1117 | PF10930.11 |
| MH370387.1 | 6815 | 7108 | - | AXC42624.1 | 97 | 11218.68 | 5.0 | 9.9153 | anti-RecBCD | phrog_656 | PF11043.11 |
| MH370387.1 | 7155 | 7439 | - | AXC42625.1 | 94 | 10876.71 | 11.5 | 10.9204 | anti-RecBCD | phrog_323 ; phrog_31591 | |
| MH370387.1 | 7439 | 8146 | - | AXC42626.1 | 235 | 26753.20 | -0.5 | 6.2633 | putative DNA-binding protein Erf | phrog_1097 ; phrog_25563 ; phrog_20575 ; phrog_14970 | PF04098.18 |
| MH370387.1 | 8143 | 8286 | - | AXC42627.1 | 47 | 5541.05 | -10.5 | 3.4643 | DNA recombinase | phrog_2445 | PF17585.5 |
| MH370387.1 | 8276 | 8464 | - | AXC42628.1 | 62 | 7142.99 | -2.5 | 4.5845 | putative kil protein | phrog_2394 | PF17519.5 |
| MH370387.1 | 8445 | 8603 | - | AXC42629.1 | 52 | 5760.74 | 4.0 | 10.2267 | putative regulatory C3 protein | phrog_550 ; phrog_2461 | PF02061.19 |
| MH370387.1 | 8688 | 9002 | - | AXC42630.1 | 104 | 12293.64 | -16.5 | 3.7808 | superinfection exclusion protein | phrog_19120 ; phrog_5217 ; phrog_1510 | PF17420.5 |
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
| Fam ID | Seed protein | Member count | Model | Alignment | APIS006 | AXC42625.1 | 37 | HMM model | Member alignment |
|---|
| Hit APIS family | E-Value | Query Start | Query End | Hit Start | Hit End | Immune system | Seed protein |
|---|---|---|---|---|---|---|---|
| APIS049 | 2.05E-32 | 1 | 84 | 11 | 94 | IMGVR_UViG_3300009856_000087|3300009856|Ga0131695_10912748 |
| APIS | Contig | Range |
|---|---|---|
| APIS006 | MH370387.1 | 5267 - 9002 |