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Seed proteins  | Seed protein 3D structures  |  Structural homologs  |  Family infomation  | Homology to other families  | Family members, sources, and their hosts  

Seed protein information help

APIS family ID APIS049
Inhibited defense system
CLAN ID CLAN014
Seed protein property
Accession ID Gene name Protein length Molecular weight Isoelectric point Charge
IMGVR_UViG_3300009856_000087|3300009856|Ga0131695_10912748
gene_page: 97 11094.1 11.2003 12.5
Phage property
Phage Assembly id
PMID/References
PDB structures ;
Pfam domains
Phrog
Host taxa d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;;
Gene Location Start: ;  End: ;  Strand: 
Description
Note This family does not have seed protein, but we infer its function is defending RecBCD because it belongs to the same clan as family APIS006 which has seed protein.

Predicted 3D structure by alphafold2 with pTM = 0.59 Download help

pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;      Download help

Structural homologs

No homologs found in AlphaFold database

No homologs found in esmfold database

Family information      Download help

Fam ID Seed protein Member count Model Alignment
APIS049 IMGVR_UViG_3300009856_000087|3300009856|Ga0131695_10912748 5 HMM model Member alignment

Host Taxa distribution

Length distribution

Homology to other families       download full data without filtering help

Clan ID: CLAN014

Hit APIS family E-Value Query Start Query End Hit Start Hit End Immune system Seed protein
APIS006 3.38E-38 1 96 1 96 RecBCD AXC42625.1

Family members, sources, and their hosts        help

Results of representative protein blast against members.

Member pident evalue bitscore qcovs phage host SourceDB Pfam Phrog
IMGVR_UViG_2636415732_000001|2636415732|2637784744 90.722 6.28e-58 181 100% Klebsiella oxytoca IMGVR phrog_
IMGVR_UViG_2901726420_000011|2901726420|2901731076 64.948 9.95e-39 132 100% Klebsiella electrica IMGVR phrog_
IMGVR_UViG_3300009856_000087|3300009856|Ga0131695_10912748 100.000 4.51e-65 199 100% Enterobacteriaceae IMGVR phrog_
uvig_355136_4 95.876 4.37e-62 192 99% Klebsiella_A oxytoca GPD phrog_
uvig_577660_8 85.567 9.39e-55 173 99% GPD phrog_