| APIS family ID | APIS049 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | ||||||||||||||
| CLAN ID | CLAN005 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | ||||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | ||||||||||||||
| Phrog | ||||||||||||||
| Host taxa | d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;; | |||||||||||||
| Gene Location | Start: ; End: ; Strand: | |||||||||||||
| Description | ||||||||||||||
| Note | This family does not have seed protein, but we infer its function is defending RecBCD because it belongs to the same clan as family APIS006 which has seed protein. | |||||||||||||
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
| Fam ID | Seed protein | Member count | Model | Alignment | APIS049 | IMGVR_UViG_3300009856_000087|3300009856|Ga0131695_10912748 | 5 | HMM model | Member alignment |
|---|
| Hit APIS family | E-Value | Query Start | Query End | Hit Start | Hit End | Immune system | Seed protein |
|---|---|---|---|---|---|---|---|
| APIS006 | 3.38E-38 | 1 | 96 | 1 | 96 | RecBCD | AXC42625.1 |
| Member | pident | evalue | bitscore | qcovs | phage | host | SourceDB | Pfam | Phrog |
|---|---|---|---|---|---|---|---|---|---|
| IMGVR_UViG_2636415732_000001|2636415732|2637784744 | 90.722 | 6.28e-58 | 181 | 100% | Klebsiella oxytoca | IMGVR | phrog_ | ||
| IMGVR_UViG_2901726420_000011|2901726420|2901731076 | 64.948 | 9.95e-39 | 132 | 100% | Klebsiella electrica | IMGVR | phrog_ | ||
| IMGVR_UViG_3300009856_000087|3300009856|Ga0131695_10912748 | 100.000 | 4.51e-65 | 199 | 100% | Enterobacteriaceae | IMGVR | phrog_ | ||
| uvig_355136_4 | 95.876 | 4.37e-62 | 192 | 99% | Klebsiella_A oxytoca | GPD | phrog_ | ||
| uvig_577660_8 | 85.567 | 9.39e-55 | 173 | 99% | GPD | phrog_ |