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Seed proteins  | Seed genomic context  | Seed protein 3D structures  |  Structural homologs  |  Family infomation  | Homology to other families  | Family members, sources, and their hosts  

Seed protein information help

APIS family ID APIS010
Inhibited defense system restriction-modification (RM);bacteriophage exclusion (BREX)
CLAN ID CLAN009
Seed protein property
Accession ID Gene name Protein length Molecular weight Isoelectric point Charge
NP_041954.1 gene_page: Ocr 117 13809.08 3.6438 -26.0
Phage property
Phage Assembly id
T7 of E. coli GCF_000844825.1
PMID/References PMID:32338761 329108 12235377 11804597
PDB structures 1S7Z;
Pfam domains PF08684.13
Phrog phrog_2568
Host taxa d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli
Gene Location Start: 925;  End: 1278;  Strand: +
Description Ocr physically associates with BrxX methyltransferase to neutralizes their ability to both methylate and exclude incoming phage DNA. Ocr structurally mimics the DNA phosphate backbone and interacts directly with EcoKI (both the MTase and REase domain of this type I R–M enzyme), thereby interfering with the activity of this system.

Seed genomic context      Download table help

Seed genomic context- JBrowse     

PDB structure: 1S7Z ; Download help

Full Sequence      Download help

MAMSNMTYNN  VFDHAYEMLK  ENIRYDDIRD  TDDLHDAIHM  AADNAVPHYY  ADIFSVMASE60
GIDLEFEDSG  LMPDTKDVIR  ILQARIYEQL  TIDLWEDAED  LLNEYLEEVE  EYEEDEE117

Structural homologs

No homologs found in AlphaFold database

Structure homologs against by esmdb (html) ; download full result table

Hit Query start Query end Hit start Hit end TMscore(ali) TMscore(avg)
MGYP002658425696.pdb 1 106 6 114 0.7328 0.6731

Family information      Download help

Fam ID Seed protein Member count Model Alignment
APIS010 NP_041954.1 42 HMM model Member alignment

Host Taxa distribution

Length distribution

Homology to other families       download full data without filtering help

Clan ID: CLAN009

Family members, sources, and their hosts        help

APIS Contig Range
APIS010 NC_001604.1 925 - 3100

Gene cluster comparison plot by clinker      Download html


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Mar. 09th - Apr. 09th