APIS family ID | APIS077 | |||||||||||||
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Inhibited defense system | ||||||||||||||
CLAN ID | CLAN020 | |||||||||||||
Seed protein property |
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Phage property |
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PMID/References | ||||||||||||||
PDB structures | ; | |||||||||||||
Pfam domains | PF08684.13 | |||||||||||||
Phrog | phrog_2568 | |||||||||||||
Host taxa | d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Proteus; | |||||||||||||
Gene Location | Start: 2028; End: 2357; Strand: + | |||||||||||||
Description | ||||||||||||||
Note | This family does not have seed protein, but we infer its function is defending restriction-modification (RM);bacteriophage exclusion (BREX) because it belongs to the same clan as family APIS010 which has seed protein. |
Genome accession | Start | End | Strand | Protein ID | Length | Molecular weight | Charge | Isoelectric point | Function | Phrog | PFAM |
---|---|---|---|---|---|---|---|---|---|---|---|
KU946962 | 619 | 882 | + | KU946962_00001 | 87 | 10056.97 | 10056.97 | 10.5254 | hypothetical protein | phrog_23827 | |
KU946962 | 884 | 1096 | + | KU946962_00002 | 70 | 8106.36 | 8106.36 | 5.5127 | hypothetical protein | phrog_6403 | |
KU946962 | 1096 | 1305 | + | KU946962_00003 | 69 | 8340.47 | 8340.47 | 4.0090 | hypothetical protein | phrog_6403 | |
KU946962 | 1463 | 1963 | + | KU946962_00004 | 166 | 19922.16 | 19922.16 | 4.0843 | hypothetical protein | phrog_23478 | |
KU946962 | 2028 | 2357 | + | KU946962_00005 | 109 | 12584.91 | 12584.91 | 3.3526 | ocr-like anti-restriction | phrog_2568 | PF08684.13 |
KU946962 | 2542 | 2754 | + | KU946962_00006 | 70 | 8067.37 | 8067.37 | 4.8430 | hypothetical protein | phrog_19783 | |
KU946962 | 2825 | 3670 | + | KU946962_00007 | 281 | 32073.50 | 32073.50 | 4.8246 | hypothetical protein | phrog_22983 ; phrog_4571 | |
KU946962 | 3744 | 6371 | + | KU946962_00008 | 875 | 99624.91 | 99624.91 | 6.8163 | RNA polymerase | phrog_2166 ; phrog_414 ; phrog_2051 | PF00940.22 |
KU946962 | 3744 | 6371 | + | KU946962_00008 | 875 | 99624.91 | 99624.91 | 6.8163 | RNA polymerase | phrog_2166 ; phrog_414 ; phrog_2051 | PF14700.9 |
KU946962 | 6674 | 7087 | + | KU946962_00009 | 137 | 15817.92 | 15817.92 | 10.2744 | HNH endonuclease | phrog_37683 ; phrog_4578 ; phrog_99 ; phrog_1492 ; phrog_959 ; phrog_59 ; phrog_14913 | PF13392.9 |
KU946962 | 7089 | 7217 | + | KU946962_00010 | 42 | 5196.09 | 5196.09 | 11.1658 | hypothetical protein | phrog_4383 ; phrog_2490 | PF08200.14 |
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Fam ID | Seed protein | Member count | Model | Alignment | APIS077 | KU946962_00005 | 81 | HMM model | Member alignment |
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Hit APIS family | E-Value | Query Start | Query End | Hit Start | Hit End | Immune system | Seed protein |
---|---|---|---|---|---|---|---|
APIS010 | 6.23E-55 | 2 | 109 | 6 | 112 | restriction-modification (RM);bacteriophage exclusion (BREX) | NP_041954.1 |
APIS087 | 3.93E-50 | 2 | 109 | 6 | 112 | ON528733_00011 | |
APIS085 | 2.01E-49 | 2 | 108 | 6 | 111 | OL964750_00001 |
Member | pident | evalue | bitscore | qcovs | phage | host | SourceDB | Pfam | Phrog |
---|---|---|---|---|---|---|---|---|---|
EU734174_00002 | 50.467 | 1.05e-24 | 98.6 | 91% | Escherichia phage 13a | Escherichia | INPHARED | PF08684 | phrog_2568 |
GU595417_00004 | 48.980 | 5.88e-21 | 89.0 | 90% | Escherichia phage UAB_Phi78 | Escherichia | INPHARED | PF08684 | phrog_2568 |
HG818823_00001 | 40.449 | 7.40e-12 | 65.9 | 82% | Citrobacter phage CR44b | Citrobacter | INPHARED | PF08684 | phrog_2568 |
IMGVR_UViG_2627853805_000003|2627853805|2629048919 | 43.810 | 6.91e-17 | 79.0 | 87% | Yersinia pestis | IMGVR | PF08684 | phrog_2568 | |
IMGVR_UViG_3300013307_000052|3300013307|Ga0157372_1000212327 | 43.750 | 1.84e-15 | 74.7 | 87% | IMGVR | PF08684 | phrog_2568 | ||
IMGVR_UViG_3300013837_000006|3300013837|Ga0120084_100057 | 43.396 | 8.87e-18 | 81.3 | 88% | IMGVR | PF08684 | phrog_2568 | ||
IMGVR_UViG_3300029310_000088|3300029310|Ga0134545_100214110 | 40.000 | 6.85e-12 | 65.9 | 81% | IMGVR | PF08684 | phrog_2568 | ||
IMGVR_UViG_3300031087_000014|3300031087|Ga0308161_1000186228 | 43.158 | 1.03e-14 | 73.2 | 83% | IMGVR | PF08684 | phrog_2568 | ||
IMGVR_UViG_3300031087_000234|3300031087|Ga0308161_100037196 | 42.708 | 8.43e-14 | 70.9 | 86% | IMGVR | PF08684 | phrog_2568 | ||
IMGVR_UViG_3300031151_000001|3300031151|Ga0308162_100006695 | 43.158 | 8.45e-15 | 73.2 | 85% | IMGVR | PF08684 | phrog_2568 | ||
IMGVR_UViG_3300045988_000522|3300045988|Ga0495776_019744_25048_25395 | 43.925 | 1.47e-17 | 80.5 | 92% | IMGVR | PF08684 | phrog_2568 | ||
IMGVR_UViG_3300045988_000532|3300045988|Ga0495776_056017_25063_25398 | 42.991 | 5.92e-19 | 84.0 | 95% | IMGVR | PF08684 | phrog_2568 | ||
IMGVR_UViG_3300045988_001011|3300045988|Ga0495776_127866_4638_4970 | 48.598 | 3.60e-22 | 92.0 | 96% | IMGVR | PF08684 | phrog_2568 | ||
IMGVR_UViG_3300045988_002335|3300045988|Ga0495776_012863_5059_5415 | 42.056 | 7.66e-19 | 84.0 | 90% | IMGVR | PF08684 | phrog_2568 | ||
IMGVR_UViG_3300045988_004017|3300045988|Ga0495776_020355_15974_16330 | 41.441 | 7.29e-17 | 79.0 | 89% | IMGVR | PF08684 | phrog_2568 | ||
IMGVR_UViG_3300045988_011354|3300045988|Ga0495776_092730_36573_36920 | 46.729 | 2.93e-18 | 82.4 | 92% | IMGVR | PF08684 | phrog_2568 | ||
JN986844_00006 | 41.509 | 1.51e-15 | 75.5 | 89% | Escherichia phage vB_EcoP_ACG-C91 | Escherichia | INPHARED | PF08684 | phrog_2568 |
KM819695_00006 | 50.000 | 1.16e-22 | 93.6 | 93% | Proteus phage PM 85 | Proteus | INPHARED | PF08684 | phrog_2568 |
KT852574_00001 | 47.664 | 5.28e-21 | 89.4 | 88% | Yersinia phage vB_YenP_AP10 | Yersinia | INPHARED | PF08684 | phrog_2568 |
KU946962_00005 | 100.000 | 2.57e-71 | 216 | 100% | Proteus phage PM 116 | Proteus | INPHARED | PF08684 | phrog_2568 |
KX279892_00004 | 41.509 | 2.78e-16 | 77.0 | 93% | Escherichia phage AAPEc6 | Escherichia | INPHARED | PF08684 | phrog_2568 |
KY084243_00001 | 35.556 | 9.48e-11 | 63.2 | 83% | Pectobacterium phage PP74 | Pectobacterium | INPHARED | PF08684 | phrog_2568 |
KY295894_00010 | 39.560 | 4.35e-12 | 66.2 | 83% | Escherichia phage vB_EcoP_F | Escherichia | INPHARED | PF08684 | phrog_2568 |
KY295899_00034 | 38.889 | 1.38e-12 | 67.4 | 82% | Escherichia phage vB_EcoP_R | Escherichia | INPHARED | PF08684 | phrog_2568 |
KY435490_00051 | 42.453 | 4.98e-17 | 79.3 | 89% | Escherichia phage K1E | Escherichia | INPHARED | PF08684 | phrog_2568 |
LC730323_00005 | 44.898 | 2.46e-17 | 80.1 | 90% | Salmonella phage SP6 | Salmonella | INPHARED | PF08684 | phrog_2568 |
MGV-GENOME-0199759_10 | 37.778 | 6.78e-11 | 63.5 | 83% | MGV | PF08684 | phrog_2568 | ||
MGV-GENOME-0218412_33 | 47.664 | 5.96e-18 | 81.6 | 91% | MGV | PF08684 | phrog_2568 | ||
MGV-GENOME-0263483_7 | 48.598 | 4.06e-22 | 92.0 | 91% | MGV | PF08684 | phrog_2568 | ||
MGV-GENOME-0265351_44 | 47.664 | 8.06e-22 | 91.7 | 86% | MGV | PF08684 | phrog_2568 | ||
MGV-GENOME-0279303_7 | 43.519 | 5.84e-17 | 79.0 | 92% | MGV | PF08684 | phrog_2568 | ||
MGV-GENOME-0286050_29 | 42.991 | 6.68e-19 | 84.0 | 92% | MGV | PF08684 | phrog_2568 | ||
MGV-GENOME-0286366_31 | 43.925 | 1.52e-17 | 80.5 | 91% | MGV | PF08684 | phrog_2568 | ||
MGV-GENOME-0286693_16 | 42.453 | 5.16e-17 | 79.3 | 88% | MGV | PF08684 | phrog_2568 | ||
MGV-GENOME-0286695_22 | 41.441 | 7.54e-17 | 79.0 | 88% | MGV | PF08684 | phrog_2568 | ||
MGV-GENOME-0290208_38 | 42.453 | 4.23e-17 | 79.3 | 89% | Treponema_D | MGV | PF08684 | phrog_2568 | |
MGV-GENOME-0291317_9 | 42.056 | 7.93e-19 | 84.0 | 89% | MGV | PF08684 | phrog_2568 | ||
MGV-GENOME-0291506_39 | 46.729 | 3.04e-18 | 82.4 | 91% | MGV | PF08684 | phrog_2568 | ||
MGV-GENOME-0292351_18 | 43.925 | 2.73e-17 | 79.7 | 91% | MGV | PF08684 | phrog_2568 | ||
MH382198_00008 | 48.980 | 4.04e-21 | 89.7 | 90% | Salmonella phage 3A_8767 | Salmonella | INPHARED | PF08684 | phrog_2568 |
MH400309_00003 | 37.778 | 2.83e-11 | 64.3 | 83% | Escherichia phage Vec13 | Escherichia | INPHARED | PF08684 | phrog_2568 |
MH729818_00006 | 43.564 | 9.91e-16 | 75.9 | 93% | Escherichia phage LL11 | Escherichia | INPHARED | PF08684 | phrog_2568 |
MK033136_00018 | 40.449 | 1.60e-13 | 70.1 | 80% | Enterobacter phage EcpYZU01 | Enterobacter | INPHARED | PF08684 | phrog_2568 |
MK373771_00004 | 43.564 | 5.04e-16 | 76.6 | 84% | Escherichia phage vB_EcoP_R4596 | Escherichia | INPHARED | PF08684 | phrog_2568 |
MK380014_00006 | 45.794 | 1.47e-17 | 80.5 | 92% | Klebsiella phage K1-ULIP33 | Klebsiella | INPHARED | PF08684 | phrog_2568 |
MK521905_00043 | 40.000 | 1.26e-11 | 65.1 | 83% | Klebsiella phage vB_KpnP_FZ12 | Klebsiella | INPHARED | PF08684 | phrog_2568 |
MK903279_00003 | 38.889 | 2.59e-12 | 67.0 | 83% | Escherichia phage Peacock | Escherichia | INPHARED | PF08684 | phrog_2568 |
MN067430_00002 | 38.889 | 7.49e-12 | 65.9 | 83% | Escherichia phage vB_EcoP-Ro103C3lw | Escherichia | INPHARED | PF08684 | phrog_2568 |
MW358931_00007 | 56.364 | 2.25e-28 | 107 | 100% | Providencia phage PSTRCR_128 | Providencia | INPHARED | PF08684 | phrog_2568 |
MW883060_00049 | 48.515 | 5.56e-22 | 91.7 | 93% | Escherichia phage vB_EcoP_SYGE1 | Escherichia | INPHARED | PF08684 | phrog_2568 |
MZ031013_00007 | 42.453 | 3.32e-17 | 79.7 | 97% | Escherichia phage vB_EcoA_fTuEco01 | Escherichia | INPHARED | PF08684 | phrog_2568 |
MZ234012_00051 | 44.000 | 6.56e-16 | 76.3 | 92% | Escherichia phage vB_EcoP-101101UKE1 | Escherichia | INPHARED | PF08684 | phrog_2568 |
MZ234032_00048 | 44.144 | 5.22e-17 | 79.0 | 98% | Escherichia phage vB_EcoP-G3A1 | Escherichia | INPHARED | PF08684 | phrog_2568 |
MZ234050_00054 | 42.574 | 4.79e-17 | 79.3 | 93% | Escherichia phage vB_EcoP-UTI89UKE3 | Escherichia | INPHARED | PF08684 | phrog_2568 |
MZ398244_00050 | 43.925 | 6.87e-17 | 78.6 | 98% | Klebsiella phage IME184 | Klebsiella | INPHARED | PF08684 | phrog_2568 |
MZ573924_00040 | 45.918 | 5.43e-17 | 79.0 | 90% | Salmonella phage vB_SenAt-pSL2 | Salmonella | INPHARED | PF08684 | phrog_2568 |
OK499982_00001 | 55.046 | 6.92e-29 | 109 | 100% | Morganella phage vB_MmoP_Lilpapawes | Morganella | INPHARED | PF08684 | phrog_2568 |
OL362272_00015 | 44.762 | 7.00e-17 | 78.6 | 96% | Escherichia phage 6948 | Escherichia | INPHARED | PF08684 | phrog_2568 |
OL362273_00015 | 44.660 | 1.72e-16 | 77.8 | 94% | Escherichia phage 6949 | Escherichia | INPHARED | PF08684 | phrog_2568 |
OL416096_00008 | 42.453 | 9.59e-16 | 75.9 | 97% | Proteus phage 309 | Proteus | INPHARED | PF08684 | phrog_2568 |
OL539729_00049 | 39.623 | 1.34e-13 | 70.5 | 97% | Salmonella phage PRF-SP3 | Salmonella | INPHARED | PF08684 | phrog_2568 |
OM194188_00009 | 38.889 | 8.72e-12 | 65.5 | 83% | Klebsiella phage Shaphc-168R | Klebsiella | INPHARED | PF08684 | phrog_2568 |
ON148529_00001 | 37.778 | 8.15e-11 | 63.2 | 83% | Klebsiella phage Kp9 | Klebsiella | INPHARED | PF08684 | phrog_2568 |
ON210145_00004 | 44.000 | 2.84e-16 | 77.0 | 92% | Escherichia phage EEc4 | Escherichia | INPHARED | PF08684 | phrog_2568 |
ON526839_00042 | 45.918 | 1.79e-17 | 80.1 | 90% | Salmonella phage GRNsp51 | Salmonella | INPHARED | PF08684 | phrog_2568 |
ON548433_00010 | 40.659 | 1.56e-12 | 67.4 | 83% | Escherichia phage vB_EcoP_FFK3 | Escherichia | INPHARED | PF08684 | phrog_2568 |
ON602753_00002 | 38.889 | 8.59e-13 | 68.2 | 83% | Klebsiella phage VLCpiA3d | Klebsiella | INPHARED | PF08684 | phrog_2568 |
OP013026_00009 | 36.667 | 1.56e-15 | 58.2 | 82% | Klebsiella phage NK20 | Klebsiella | INPHARED | PF08684 | phrog_2568 |
OP018999_00008 | 40.566 | 5.24e-17 | 79.0 | 97% | Escherichia phage NTNC80A | Escherichia | INPHARED | PF08684 | phrog_2568 |
OP038547_00030 | 45.918 | 6.12e-17 | 79.0 | 90% | Salmonella phage GRNsp03 | Salmonella | INPHARED | PF08684 | phrog_2568 |
OP413828_00048 | 41.584 | 5.56e-17 | 79.0 | 93% | Klebsiella phage pKP-M186-2.1 | Klebsiella | INPHARED | PF08684 | phrog_2568 |
OX335382_00005 | 44.860 | 1.67e-17 | 80.1 | 98% | Klebsiella phage cp4 | Klebsiella | INPHARED | PF08684 | phrog_2568 |
uvig_220123_45 | 42.453 | 4.09e-17 | 79.3 | 90% | GPD | PF08684 | phrog_2568 | ||
uvig_230064_18 | 43.925 | 2.64e-17 | 79.7 | 92% | GPD | PF08684 | phrog_2568 | ||
uvig_255282_14 | 42.056 | 3.02e-18 | 82.0 | 93% | GPD | PF08684 | phrog_2568 | ||
uvig_286192_10 | 37.778 | 6.63e-11 | 63.5 | 83% | GPD | PF08684 | phrog_2568 | ||
uvig_290651_23 | 39.326 | 3.29e-12 | 66.6 | 82% | GPD | PF08684 | phrog_2568 | ||
uvig_374109_8 | 47.664 | 5.76e-18 | 81.6 | 92% | GPD | PF08684 | phrog_2568 | ||
uvig_475627_7 | 43.519 | 5.64e-17 | 79.0 | 93% | GPD | PF08684 | phrog_2568 | ||
uvig_481475_40 | 37.778 | 4.24e-16 | 59.7 | 79% | GPD | PF08684 | phrog_2568 | ||
uvig_575770_11 | 43.925 | 3.57e-20 | 87.0 | 92% | GPD | PF08684 | phrog_2568 |
APIS | Contig | Range |
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APIS077 | KU946962 | 619 - 7217 |