| APIS family ID | APIS019 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | O-antigen-based barrier | |||||||||||||
| CLAN ID | CLAN035 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | Silas et al., 2023 | |||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | ||||||||||||||
| Phrog | phrog_10252 | |||||||||||||
| Host taxa | d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia; | |||||||||||||
| Gene Location | Start: 4784; End: 5047; Strand: + | |||||||||||||
| Description | Putative O-antigen modifiers, interfere with O-antigen biosynthesis. | |||||||||||||
| Genome accession | Start | End | Strand | Protein ID | Length | Molecular weight | Charge | Isoelectric point | Function | Phrog | PFAM |
|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_000929.1 | 1099 | 1326 | + | NP_050606.1 | 75 | 8505.73 | 5.0 | 10.1017 | transcriptional repressor | phrog_769 | PF13693.9 |
| NC_000929.1 | 1328 | 3319 | + | NP_050607.1 | 663 | 75003.29 | 15.5 | 8.9500 | Mu transposase C-terminal domain-containing protein | phrog_14727 ; phrog_18348 ; phrog_15639 ; phrog_7148 ; phrog_13142 ; phrog_19169 ; phrog_19841 ; phrog_310 | PF02316.19 ;PF09039.14 ;PF02914.18 ;PF09299.14 |
| NC_000929.1 | 3358 | 4296 | + | NP_050608.1 | 312 | 35106.14 | 4.5 | 8.2714 | DNA transposition protein | phrog_29249 ; phrog_27882 ; phrog_296 | PF13401.9 ;PF09077.14 |
| NC_000929.1 | 4315 | 4539 | + | NP_050609.1 | 74 | 8416.80 | 6.0 | 10.6893 | Kil protein for bacterial septation inhibition | phrog_2743 | |
| NC_000929.1 | 4542 | 4772 | + | NP_050610.1 | 76 | 8541.08 | 5.0 | 8.2297 | hypothetical protein | phrog_37054 ; phrog_3786 | |
| NC_000929.1 | 4784 | 5047 | + | NP_050611.1 | 87 | 9217.64 | -1.0 | 5.6793 | hypothetical protein | phrog_10252 | |
| NC_000929.1 | 5062 | 5481 | + | NP_050612.1 | 139 | 16310.67 | 1.0 | 7.0398 | hypothetical protein | phrog_3690 | |
| NC_000929.1 | 5482 | 5781 | + | NP_050613.1 | 99 | 11593.44 | 7.0 | 9.4662 | transcriptional regulator, D5-like | phrog_323 | |
| NC_000929.1 | 5801 | 6325 | + | NP_050614.1 | 174 | 19045.92 | 1.0 | 7.9713 | host nuclease inhibitor | phrog_18351 ; phrog_491 | PF07352.15 |
| NC_000929.1 | 6424 | 6954 | + | NP_050615.1 | 176 | 19576.70 | -1.0 | 5.7579 | hypothetical protein | phrog_1949 ; phrog_24761 | |
| NC_000929.1 | 6954 | 7484 | + | NP_050616.1 | 176 | 19894.80 | 6.5 | 9.2845 | hypothetical protein | phrog_8700 ; phrog_2314 |
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
| Fam ID | Seed protein | Member count | Model | Alignment | APIS019 | NP_050611.1 | 28 | HMM model | Member alignment |
|---|
| APIS | Contig | Range |
|---|---|---|
| APIS019 | NC_000929.1 | 1099 - 7484 |