| APIS family ID | APIS030 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | restriction-modification (RM) | |||||||||||||
| CLAN ID | CLAN009 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | PMID:3029954 | |||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | PF02384.19,PF00176.26,PF00176.26,PF00271.34 | |||||||||||||
| Phrog | phrog_1685,phrog_37568,phrog_9133,phrog_29705,phrog_10818,phrog_21829,phrog_10089,phrog_62,phrog_11801,phrog_21007 | |||||||||||||
| Host taxa | d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli | |||||||||||||
| Gene Location | Start: 10469; End: 17236; Strand: - | |||||||||||||
| Description | Bind to phage DNA, thereby masking type I R–M recognition sites and preventing degradation of phage DNA. | |||||||||||||
| Genome accession | Start | End | Strand | Protein ID | Length | Molecular weight | Charge | Isoelectric point | Function | Phrog | PFAM |
|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_005856.1 | 2077 | 2637 | + | YP_006474.1 | 186 | 21328.83 | 21.5 | 10.6336 | Ref-like RecA filament endonuclease | phrog_5977 ; phrog_35096 ; phrog_1588 ; phrog_2321 | PF16786.8 |
| NC_005856.1 | 2716 | 3468 | + | YP_006475.1 | 250 | 28934.36 | 3.0 | 7.7913 | Mat | phrog_35046 ; phrog_22054 ; phrog_1837 | |
| NC_005856.1 | 3544 | 6456 | - | YP_006476.1 | 970 | 111458.50 | 3.0 | 6.7683 | type III restriction-modification system endonuclease | phrog_32711 ; phrog_11902 | PF04851.18 ;PF19778.2 |
| NC_005856.1 | 9750 | 9998 | - | YP_006477.1 | 82 | 9664.01 | 5.0 | 10.1725 | Lxc | phrog_2160 | |
| NC_005856.1 | 9995 | 10435 | - | YP_006478.1 | 146 | 17080.31 | -3.0 | 5.0501 | Ulx-like anti-restriction | phrog_1629 ; phrog_32226 | |
| NC_005856.1 | 10469 | 17236 | - | YP_006479.1 | 2255 | 251542.55 | -33.5 | 5.2675 | N-6 DNA methylase | phrog_21829 ; phrog_10818 ; phrog_21007 ; phrog_29705 ; phrog_10089 ; phrog_11801 ; phrog_1685 ; phrog_62 ; phrog_9133 ; phrog_37568 ; phrog_23807 | PF02384.19 ;PF00271.34 |
| NC_005856.1 | 17312 | 19021 | + | YP_006480.1 | 569 | 62749.98 | -14.0 | 4.8392 | portal protein | phrog_17253 ; phrog_1497 | |
| NC_005856.1 | 19014 | 20033 | + | YP_006481.1 | 339 | 36882.96 | -4.5 | 5.4720 | tail fiber protein | phrog_4727 ; phrog_30560 ; phrog_1801 | |
| NC_005856.1 | 20013 | 20228 | - | YP_006482.1 | 71 | 7947.13 | 4.5 | 9.3357 | LydE | ||
| NC_005856.1 | 20078 | 20332 | - | YP_006483.1 | 84 | 9936.98 | 12.0 | 11.8504 | holin | phrog_21930 | |
| NC_005856.1 | 20325 | 20882 | - | YP_006484.1 | 185 | 20256.27 | 9.0 | 9.0909 | endolysin | phrog_7 ; phrog_33083 ; phrog_10457 | PF00959.22 |
| Fam ID | Seed protein | Member count | Model | Alignment | APIS030 | YP_006479.1 | 315 | HMM model | Member alignment |
|---|
| APIS | Contig | Range |
|---|---|---|
| APIS030 | NC_005856.1 | 2077 - 20882 |