| APIS family ID | APIS036 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | O-antigen-based barrier | |||||||||||||
| CLAN ID | CLAN034 | |||||||||||||
| Seed protein property |
|
|||||||||||||
| Phage property |
|
|||||||||||||
| PMID/References | Silas et al., 2023 | |||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | ||||||||||||||
| Phrog | ||||||||||||||
| Host taxa | d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia; | |||||||||||||
| Gene Location | Start: 4208; End: 4444; Strand: + | |||||||||||||
| Description | Putative O-antigen modifiers, interfere with O-antigen biosynthesis. | |||||||||||||
| Genome accession | Start | End | Strand | Protein ID | Length | Molecular weight | Charge | Isoelectric point | Function | Phrog | PFAM |
|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_048799.1 | 211 | 2325 | + | YP_009850471.1 | 704 | 79302.67 | -4.5 | 5.8932 | RNA polymerase | phrog_414 | PF00940.22 |
| NC_048799.1 | 2368 | 2568 | + | YP_009850472.1 | 66 | 7803.76 | -3.5 | 4.9553 | hypothetical protein | phrog_20790 | |
| NC_048799.1 | 2661 | 2825 | + | YP_009850473.1 | 54 | 6259.12 | -1.0 | 5.6316 | hypothetical protein | phrog_32102 | |
| NC_048799.1 | 3959 | 4207 | + | YP_009850474.1 | 82 | 9286.47 | -5.0 | 4.3193 | hypothetical protein | phrog_23678 | |
| NC_048799.1 | 4208 | 4444 | + | YP_009850475.1 | 78 | 9002.44 | 6.0 | 9.7411 | hypothetical protein | ||
| NC_048799.1 | 4446 | 4634 | + | YP_009850476.1 | 62 | 7535.48 | -6.5 | 4.0700 | hypothetical protein | phrog_28706 | |
| NC_048799.1 | 4631 | 4876 | + | YP_009850477.1 | 81 | 9434.78 | -8.0 | 4.0537 | hypothetical protein | phrog_36363 | |
| NC_048799.1 | 4886 | 5059 | + | YP_009850478.1 | 57 | 6733.95 | 2.5 | 8.9777 | hypothetical protein | phrog_30513 | |
| NC_048799.1 | 5155 | 5451 | + | YP_009850479.1 | 98 | 10829.37 | -4.0 | 4.6135 | hypothetical protein | phrog_31855 | |
| NC_048799.1 | 5467 | 5730 | + | YP_009850480.1 | 87 | 9750.23 | -1.0 | 5.6566 | hypothetical protein | phrog_18131 |
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
| Fam ID | Seed protein | Member count | Model | Alignment | APIS036 | YP_009850475.1 | 17 | HMM model | Member alignment |
|---|
| Member | pident | evalue | bitscore | qcovs | phage | host | SourceDB | Pfam | Phrog |
|---|---|---|---|---|---|---|---|---|---|
| EF460875_00004 | 67.532 | 7.32e-26 | 99.0 | 99% | Escherichia phage phiEcoM-GJ1 | Escherichia | INPHARED | phrog_ | |
| IMGVR_UViG_3300007747_000002|3300007747|Ga0101111_100007619 | 71.250 | 1.87e-33 | 118 | 100% | IMGVR | phrog_ | |||
| MF044458_00005 | 89.744 | 3.44e-44 | 145 | 100% | Escherichia phage ST32 | Escherichia | INPHARED | phrog_ | |
| MN122072_00041 | 73.750 | 3.47e-34 | 120 | 100% | Escherichia phage vB_EcoM_Bp10 | Escherichia | INPHARED | phrog_ | |
| MT446398_00035 | 70.000 | 1.04e-32 | 116 | 100% | Escherichia virus TH24 | Escherichia | INPHARED | phrog_ | |
| MT446399_00067 | 89.744 | 5.14e-45 | 147 | 100% | Escherichia virus TH25 | Escherichia | INPHARED | phrog_ | |
| MT446400_00069 | 87.179 | 1.18e-43 | 144 | 100% | Escherichia virus TH26 | Escherichia | INPHARED | phrog_ | |
| MT446403_00021 | 70.732 | 8.67e-32 | 114 | 100% | Escherichia virus TH29 | Escherichia | INPHARED | phrog_ | |
| MT446409_00070 | 67.500 | 1.37e-31 | 113 | 100% | Escherichia virus TH37 | Escherichia | INPHARED | phrog_ | |
| MT446419_00004 | 92.308 | 1.13e-45 | 149 | 100% | Escherichia virus TH53 | Escherichia | INPHARED | phrog_ | |
| MW147601_00003 | 69.512 | 3.10e-31 | 112 | 100% | Yersinia phage PYps16N | Yersinia | INPHARED | phrog_ | |
| MW147602_00004 | 64.935 | 2.10e-24 | 95.1 | 99% | Yersinia phage PYps16T | Yersinia | INPHARED | phrog_ | |
| OK148439_00032 | 70.732 | 4.74e-32 | 114 | 100% | Escherichia phage MLP1 | Escherichia | INPHARED | phrog_ | |
| OL741059_00003 | 70.000 | 4.38e-33 | 117 | 100% | Escherichia phage SKA49 | Escherichia | INPHARED | phrog_ | |
| OP595144_00003 | 62.338 | 1.42e-23 | 93.2 | 99% | Escherichia phage vB_EcoM_DE15 | Escherichia | INPHARED | phrog_ | |
| uvig_397811_4 | 89.744 | 3.63e-44 | 145 | 100% | GPD | phrog_ | |||
| YP_009850475.1 | 100.000 | 7.23e-58 | 163 | 100% | Escherichia phage Mangalitsa | Escherichia | NCBI | phrog_ |
| APIS | Contig | Range |
|---|---|---|
| APIS036 | NC_048799.1 | 211 - 5730 |