| APIS family ID | APIS042 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | ||||||||||||||
| CLAN ID | CLAN005 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | ||||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | ||||||||||||||
| Phrog | phrog_7745 | |||||||||||||
| Host taxa | d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli | |||||||||||||
| Gene Location | Start: 31793; End: 33622; Strand: + | |||||||||||||
| Description | ||||||||||||||
| Note | This family does not have seed protein, but we infer its function is defending restriction-modification (RM) because it belongs to the same clan as family APIS021 which has seed protein. | |||||||||||||
| Genome accession | Start | End | Strand | Protein ID | Length | Molecular weight | Charge | Isoelectric point | Function | Phrog | PFAM |
|---|---|---|---|---|---|---|---|---|---|---|---|
| ivig_4422 | 27048 | 28466 | + | ivig_4422_46 | 233 | 24946.81 | 24946.81 | 4.3222 | hypothetical protein | phrog_12015 ; phrog_1219 | |
| ivig_4422 | 28466 | 29167 | + | ivig_4422_47 | 151 | 17364.87 | 17364.87 | 7.7389 | hypothetical protein | phrog_651 | PF11039.11 |
| ivig_4422 | 29167 | 29622 | + | ivig_4422_48 | 230 | 23856.53 | 23856.53 | 8.6735 | hypothetical protein | phrog_598 | |
| ivig_4422 | 29625 | 30317 | + | ivig_4422_49 | 488 | 52227.95 | 52227.95 | 6.1309 | hypothetical protein | phrog_36260 ; phrog_917 ; phrog_2534 ; phrog_35431 ; phrog_28221 | PF16928.8 |
| ivig_4422 | 30327 | 31793 | + | ivig_4422_50 | 610 | 64265.85 | 64265.85 | 9.8410 | hypothetical protein | phrog_29864 ; phrog_29117 ; phrog_770 ; phrog_21143 | |
| ivig_4422 | 31793 | 33622 | + | ivig_4422_51 | 212 | 24608.75 | 24608.75 | 9.0301 | hypothetical protein | phrog_7745 | |
| ivig_4422 | 33644 | 34282 | - | ivig_4422_52 | 83 | 9489.77 | 9489.77 | 4.8538 | hypothetical protein | phrog_30599 ; phrog_38161 ; phrog_582 ; phrog_1287 ; phrog_21308 ; phrog_2685 ; phrog_795 ; phrog_1388 ; phrog_228 ; phrog_7906 ; phrog_3178 | PF03869.17 |
| ivig_4422 | 34333 | 34632 | - | ivig_4422_53 | 58 | 6666.72 | 6666.72 | 11.0113 | hypothetical protein | phrog_30599 ; phrog_38161 ; phrog_582 ; phrog_1287 ; phrog_795 ; phrog_228 | PF03869.17 |
| ivig_4422 | 34705 | 34881 | + | ivig_4422_54 | 240 | 27463.44 | 27463.44 | 9.0642 | hypothetical protein | phrog_2593 ; phrog_463 ; phrog_2899 ; phrog_9976 ; phrog_245 ; phrog_2812 ; phrog_7640 ; phrog_130 ; phrog_2379 ; phrog_2127 ; phrog_377 ; phrog_5060 ; phrog_37746 | PF02498.20 |
| ivig_4422 | 34705 | 34881 | + | ivig_4422_54 | 240 | 27463.44 | 27463.44 | 9.0642 | hypothetical protein | phrog_2593 ; phrog_463 ; phrog_2899 ; phrog_9976 ; phrog_245 ; phrog_2812 ; phrog_7640 ; phrog_130 ; phrog_2379 ; phrog_2127 ; phrog_377 ; phrog_5060 ; phrog_37746 | PF10548.12 |
| ivig_4422 | 34871 | 35593 | + | ivig_4422_55 | 242 | 26772.53 | 26772.53 | 9.2193 | hypothetical protein | phrog_7940 ; phrog_32874 ; phrog_12199 ; phrog_1726 | |
| ivig_4422 | 35682 | 36410 | + | ivig_4422_56 | 84 | 9848.16 | 9848.16 | 7.3181 | hypothetical protein | phrog_582 ; phrog_1287 ; phrog_2685 ; phrog_795 ; phrog_1388 ; phrog_228 ; phrog_7906 | PF03869.17 |
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
| Fam ID | Seed protein | Member count | Model | Alignment | APIS042 | ivig_4422_51 | 16 | HMM model | Member alignment |
|---|
| Hit APIS family | E-Value | Query Start | Query End | Hit Start | Hit End | Immune system | Seed protein |
|---|---|---|---|---|---|---|---|
| APIS021 | 3.26E-25 | 54 | 207 | 34 | 185 | restriction-modification (RM) | NP_059639.1 |