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Seed proteins  | Seed protein 3D structures  |  Structural homologs  |  Family infomation  | Homology to other families  | Family members, sources, and their hosts  

Seed protein information help

APIS family ID APIS095
Inhibited defense system
CLAN ID CLAN038
Seed protein property
Accession ID Gene name Protein length Molecular weight Isoelectric point Charge
IMGVR_UViG_3300014656_000059|3300014656|Ga0180007_100010693
gene_page: 290 33646.59 5.7694 -2.5
Phage property
Phage Assembly id
IMGVR_UViG_3300014656_000059
PMID/References
PDB structures ;
Pfam domains PF09588.15
Phrog
Host taxa ;;;;;;
Gene Location Start: ;  End: ;  Strand: 
Description
Note This family does not have seed protein, but we infer its function is defending CRISPR-Cas evasion by DNA repair because it belongs to the same clan as family APIS185 which has seed protein.

Predicted 3D structure by alphafold2 with pTM = 0.68 Download help

pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;      Download help

Structural homologs

Structure homologs against by afdb (html) ; download full result table

Hit Query start Query end Hit start Hit end TMscore(ali) TMscore(avg)
AF-A0A0H3GNV3-F1-model_v4 1 289 2 207 0.8011 0.6788
AF-Q4DEY6-F1-model_v4 5 193 3 250 0.6406 0.4547
AF-Q4DJU6-F1-model_v4 5 193 3 250 0.6404 0.4538
AF-Q381W1-F1-model_v4 4 193 2 264 0.6139 0.4446

Structure homologs against by esmdb (html) ; download full result table

Hit Query start Query end Hit start Hit end TMscore(ali) TMscore(avg)
MGYP001591426411.pdb 2 190 1 190 0.9537 0.7861
MGYP000267747872.pdb 1 185 2 183 0.9574 0.7783
MGYP003406017781.pdb 1 186 2 185 0.953 0.7773
MGYP001582263125.pdb 1 189 2 189 0.9447 0.777
MGYP000205446686.pdb 1 189 8 194 0.9523 0.7767
MGYP000492282160.pdb 1 182 4 184 0.9556 0.7748
MGYP001150590291.pdb 1 184 9 190 0.9678 0.7747
MGYP001275816148.pdb 1 191 3 192 0.9382 0.7742
MGYP000341293459.pdb 1 182 6 185 0.9611 0.7728
MGYP003519301504.pdb 1 191 4 194 0.9517 0.7678

Family information      Download help

Fam ID Seed protein Member count Model Alignment
APIS095 IMGVR_UViG_3300014656_000059|3300014656|Ga0180007_100010693 7 HMM model Member alignment

Host Taxa distribution

Length distribution

Homology to other families       help

Clan ID: CLAN038

APIS095 has no similar APIS family.

Family members, sources, and their hosts        help

Results of representative protein blast against members.
Member pident evalue bitscore qcovs phage host SourceDB Pfam Phrog
IMGVR_UViG_3300014656_000059|3300014656|Ga0180007_100010693 100.000 2.297E-198 606 1.000% IMGVR PF09588 phrog_
IMGVR_UViG_3300020119_000389|3300020119|Ga0210608_1270551262 40.900 6.704E-58 201 0.966% IMGVR PF09588 phrog_
IMGVR_UViG_2651869516_000031|2651869516|2651913044 41.600 2.151E-59 205 0.962% IMGVR PF09588 phrog_
IMGVR_UViG_3300002092_000017|3300002092|JGI24218J26658_100022426 41.600 2.151E-59 205 0.962% IMGVR PF09588 phrog_
IMGVR_UViG_3300042471_001180|3300042471|Ga0453186_0003217_4823_5671 42.100 1.972E-61 211 0.976% IMGVR PF09588 phrog_7655
IMGVR_UViG_3300021959_000186|3300021959|Ga0222716_1000049333 41.300 1.573E-59 205 0.976% IMGVR PF09588 phrog_7655
IMGVR_UViG_3300023179_000007|3300023179|Ga0214923_1000148447 42.100 4.124E-62 213 0.983% IMGVR PF09588 phrog_