| APIS family ID | APIS096 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | ||||||||||||||
| CLAN ID | CLAN039 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | ||||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | PF07728.19,PF08406.15,PF00004.34,PF13521.11 | |||||||||||||
| Phrog | phrog_249 | |||||||||||||
| Host taxa | ;;;;;; | |||||||||||||
| Gene Location | Start: ; End: ; Strand: | |||||||||||||
| Description | ||||||||||||||
| Note | This family does not have seed protein, but we infer its function is defending restriction-modification (RM) because it belongs to the same clan as family APIS166 which has seed protein. | |||||||||||||
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| AF-A0A0H3H502-F1-model_v4 | 14 | 323 | 1 | 281 | 0.9402 | 0.7714 |
| AF-Q2G2J8-F1-model_v4 | 43 | 322 | 1 | 263 | 0.9022 | 0.7206 |
| AF-Q51481-F1-model_v4 | 36 | 324 | 1 | 260 | 0.9071 | 0.7203 |
| AF-O53705-F1-model_v4 | 14 | 345 | 1 | 298 | 0.8005 | 0.6694 |
| AF-X8F327-F1-model_v4 | 12 | 323 | 5 | 289 | 0.8011 | 0.6611 |
| AF-P71922-F1-model_v4 | 12 | 323 | 7 | 291 | 0.7965 | 0.6591 |
| AF-K0FAA2-F1-model_v4 | 13 | 337 | 2 | 291 | 0.793 | 0.6576 |
| AF-K0EW51-F1-model_v4 | 13 | 323 | 9 | 294 | 0.7903 | 0.6567 |
| AF-Q9I0D5-F1-model_v4 | 16 | 348 | 1 | 280 | 0.7835 | 0.639 |
| AF-P33348-F1-model_v4 | 12 | 328 | 35 | 357 | 0.7177 | 0.638 |
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| MGYP000725358559.pdb | 1 | 337 | 1 | 327 | 0.9734 | 0.851 |
| MGYP000942792073.pdb | 1 | 326 | 1 | 325 | 0.9691 | 0.8453 |
| MGYP001777979649.pdb | 10 | 341 | 1 | 314 | 0.971 | 0.834 |
| MGYP000056334911.pdb | 5 | 327 | 1 | 319 | 0.9527 | 0.8255 |
| MGYP001777638668.pdb | 10 | 323 | 1 | 312 | 0.9628 | 0.8247 |
| MGYP000921253006.pdb | 10 | 323 | 1 | 314 | 0.9584 | 0.8231 |
| MGYP000089807778.pdb | 11 | 323 | 1 | 309 | 0.9625 | 0.8216 |
| MGYP001773449981.pdb | 11 | 330 | 1 | 317 | 0.9471 | 0.8161 |
| MGYP001466739184.pdb | 1 | 323 | 1 | 319 | 0.9435 | 0.8154 |
| MGYP001389673498.pdb | 3 | 327 | 1 | 328 | 0.9272 | 0.8128 |
| Fam ID | Seed protein | Member count | Model | Alignment | APIS096 | IMGVR_UViG_3300030446_000094|3300030446|Ga0169454_10065948 | 5 | HMM model | Member alignment |
|---|
| Member | pident | evalue | bitscore | qcovs | phage | host | SourceDB | Pfam | Phrog |
|---|---|---|---|---|---|---|---|---|---|
| IMGVR_UViG_3300030446_000094|3300030446|Ga0169454_10065948 | 100.000 | 6.958E-296 | 896 | 1.000% | IMGVR | PF07728 PF08406 PF00004 PF13521 | phrog_249 | ||
| IMGVR_UViG_642979316_000010|642979316|643138398 | 97.800 | 6.958E-296 | 896 | 1.000% | Desulfovibrio piger | IMGVR | PF07728 PF08406 PF00004 PF13521 | phrog_249 | |
| IMGVR_UViG_3300023687_000160|3300023687|Ga0257069_1000289124 | 66.400 | 2.341E-186 | 580 | 0.995% | IMGVR | PF07728 PF08406 PF17867 PF00004 | phrog_249 | ||
| IMGVR_UViG_3300023705_000157|3300023705|Ga0257068_1000318124 | 66.200 | 8.237E-186 | 578 | 0.995% | IMGVR | PF07728 PF08406 PF00004 PF17867 | phrog_249 | ||
| IMGVR_UViG_3300028580_000125|3300028580|Ga0268357_100070164 | 69.100 | 5.792E-195 | 605 | 0.986% | Desulfovibrio | IMGVR | PF07728 PF08406 PF00004 PF13521 PF13401 | phrog_249 |