| APIS family ID | APIS097 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | ||||||||||||||
| CLAN ID | CLAN003 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | ||||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | PF07275.16 | |||||||||||||
| Phrog | ||||||||||||||
| Host taxa | ;;;;;; | |||||||||||||
| Gene Location | Start: ; End: ; Strand: | |||||||||||||
| Description | ||||||||||||||
| Note | This family does not have seed protein, but we infer its function is defending restriction-modification (RM) because it belongs to the same clan as family APIS003,ardu which has seed protein. | |||||||||||||
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| AF-A0A0H3GZQ3-F1-model_v4 | 7 | 174 | 4 | 168 | 0.767 | 0.7165 |
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| MGYP000488331263.pdb | 7 | 175 | 6 | 179 | 0.8359 | 0.8047 |
| MGYP000084352845.pdb | 6 | 175 | 5 | 181 | 0.8348 | 0.8012 |
| MGYP000295163498.pdb | 5 | 175 | 1 | 177 | 0.8245 | 0.7947 |
| MGYP001343416942.pdb | 6 | 174 | 1 | 161 | 0.8474 | 0.793 |
| MGYP000025786350.pdb | 10 | 175 | 1 | 161 | 0.8464 | 0.7904 |
| MGYP001404333992.pdb | 6 | 175 | 1 | 176 | 0.8122 | 0.7893 |
| MGYP001233561573.pdb | 6 | 175 | 1 | 167 | 0.8331 | 0.7874 |
| MGYP002737271532.pdb | 6 | 175 | 4 | 178 | 0.8176 | 0.7873 |
| MGYP000940458958.pdb | 7 | 175 | 7 | 180 | 0.819 | 0.7854 |
| MGYP003658819152.pdb | 7 | 175 | 1 | 167 | 0.8276 | 0.7848 |
| Fam ID | Seed protein | Member count | Model | Alignment | APIS097 | IMGVR_UViG_3300032329_000792|3300032329|Ga0335329_10068837 | 7 | HMM model | Member alignment |
|---|
| Member | pident | evalue | bitscore | qcovs | phage | host | SourceDB | Pfam | Phrog |
|---|---|---|---|---|---|---|---|---|---|
| IMGVR_UViG_3300032329_000792|3300032329|Ga0335329_10068837 | 100.000 | 4.545E-120 | 374 | 1.000% | IMGVR | PF07275 | phrog_ | ||
| IMGVR_UViG_3300022752_000858|3300022752|Ga0214917_1000599831 | 88.600 | 1.265E-103 | 327 | 1.000% | IMGVR | PF07275 | phrog_14321 | ||
| IMGVR_UViG_3300009151_000159|3300009151|Ga0114962_1000038115 | 61.200 | 5.635E-62 | 207 | 0.937% | IMGVR | PF07275 | phrog_ | ||
| IMGVR_UViG_3300006121_000098|3300006121|Ga0007824_100022634 | 60.400 | 5.635E-62 | 207 | 0.960% | IMGVR | PF07275 | phrog_ | ||
| IMGVR_UViG_3300020712_000011|3300020712|Ga0214255_100010825 | 62.000 | 3.992E-65 | 216 | 0.971% | IMGVR | PF07275 | phrog_ | ||
| IMGVR_UViG_3300027749_000232|3300027749|Ga0209084_10004297 | 61.200 | 5.635E-62 | 207 | 0.937% | IMGVR | PF07275 | phrog_ | ||
| IMGVR_UViG_3300025369_000031|3300025369|Ga0208382_100006023 | 60.400 | 5.635E-62 | 207 | 0.960% | IMGVR | PF07275 | phrog_ |