| APIS family ID | APIS098 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | ||||||||||||||
| CLAN ID | CLAN003 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | ||||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | PF07275.16 | |||||||||||||
| Phrog | phrog_14321 | |||||||||||||
| Host taxa | ;;;;;; | |||||||||||||
| Gene Location | Start: ; End: ; Strand: | |||||||||||||
| Description | ||||||||||||||
| Note | This family does not have seed protein, but we infer its function is defending restriction-modification (RM) because it belongs to the same clan as family APIS003,ardu which has seed protein. | |||||||||||||
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| AF-A0A132ZEK5-F1-model_v4 | 1 | 177 | 1 | 166 | 0.786 | 0.732 |
| AF-A0A132P918-F1-model_v4 | 1 | 177 | 1 | 166 | 0.785 | 0.7285 |
| AF-A0A0H3GZQ3-F1-model_v4 | 1 | 176 | 5 | 168 | 0.762 | 0.7108 |
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| MGYP001404333992.pdb | 1 | 177 | 2 | 176 | 0.845 | 0.8228 |
| MGYP002642003215.pdb | 1 | 177 | 2 | 169 | 0.8527 | 0.8148 |
| MGYP000295163498.pdb | 1 | 177 | 2 | 177 | 0.836 | 0.8126 |
| MGYP003388279993.pdb | 1 | 177 | 1 | 175 | 0.8353 | 0.8107 |
| MGYP001229225139.pdb | 7 | 177 | 1 | 183 | 0.8502 | 0.8105 |
| MGYP001310983550.pdb | 1 | 177 | 1 | 174 | 0.8355 | 0.8087 |
| MGYP001820397175.pdb | 1 | 177 | 7 | 180 | 0.832 | 0.8082 |
| MGYP001810211433.pdb | 1 | 177 | 5 | 174 | 0.8317 | 0.8076 |
| MGYP001607116293.pdb | 1 | 177 | 1 | 174 | 0.8342 | 0.8076 |
| MGYP003120263355.pdb | 1 | 177 | 1 | 171 | 0.8379 | 0.8032 |
| Fam ID | Seed protein | Member count | Model | Alignment | APIS098 | IMGVR_UViG_3300033553_000842|3300033553|Ga0371479_1082023391 | 14 | HMM model | Member alignment |
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