| APIS family ID | APIS099 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | ||||||||||||||
| CLAN ID | CLAN038 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | ||||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | PF09588.15 | |||||||||||||
| Phrog | ||||||||||||||
| Host taxa | ;;;;;; | |||||||||||||
| Gene Location | Start: ; End: ; Strand: | |||||||||||||
| Description | ||||||||||||||
| Note | This family does not have seed protein, but we infer its function is defending CRISPR-Cas evasion by DNA repair because it belongs to the same clan as family APIS185 which has seed protein. | |||||||||||||
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| AF-Q8GW93-F1-model_v4 | 1 | 283 | 39 | 316 | 0.6093 | 0.5453 |
| AF-Q8SXR5-F1-model_v4 | 3 | 275 | 249 | 454 | 0.5578 | 0.4516 |
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| MGYP001327248204.pdb | 3 | 255 | 1 | 251 | 0.8986 | 0.8251 |
| MGYP001636525833.pdb | 1 | 266 | 5 | 277 | 0.8815 | 0.8209 |
| MGYP000205446686.pdb | 1 | 190 | 4 | 194 | 0.9512 | 0.789 |
| MGYP001275816148.pdb | 2 | 194 | 1 | 194 | 0.9496 | 0.7877 |
| MGYP003456770483.pdb | 3 | 183 | 1 | 181 | 0.9688 | 0.7858 |
| MGYP001764809385.pdb | 1 | 272 | 3 | 192 | 0.9421 | 0.7812 |
| MGYP001584478192.pdb | 1 | 193 | 2 | 194 | 0.9383 | 0.7807 |
| MGYP000492282160.pdb | 1 | 183 | 1 | 184 | 0.9567 | 0.7803 |
| MGYP001582263125.pdb | 1 | 190 | 1 | 189 | 0.9478 | 0.7799 |
| MGYP000007684401.pdb | 7 | 205 | 1 | 199 | 0.9256 | 0.7799 |
| Fam ID | Seed protein | Member count | Model | Alignment | APIS099 | IMGVR_UViG_3300050134_000048|3300050134|Ga0500026_0000319_27356_28222 | 47 | HMM model | Member alignment |
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