| APIS family ID | APIS102 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | ||||||||||||||
| CLAN ID | CLAN041 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | ||||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | PF06114.18,PF06114.18 | |||||||||||||
| Phrog | ||||||||||||||
| Host taxa | d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Listeriaceae;g__Listeria;s__unclassified Listeria species | |||||||||||||
| Gene Location | Start: 24510; End: 25001; Strand: - | |||||||||||||
| Description | ||||||||||||||
| Note | This family does not have seed protein, but we infer its function is defending SOS response because it belongs to the same clan as family APIS132 which has seed protein. | |||||||||||||
| Genome accession | Start | End | Strand | Protein ID | Length | Molecular weight | Charge | Isoelectric point | Function | Phrog | PFAM |
|---|---|---|---|---|---|---|---|---|---|---|---|
| DQ003642 | 22067 | 22300 | + | DQ003642_00026 | 77 | 9390.85 | -3.0 | 5.0354 | hypothetical protein | phrog_4945 | |
| DQ003642 | 22297 | 22500 | + | DQ003642_00027 | 67 | 7973.08 | 0.0 | 6.2537 | hypothetical protein | phrog_4724 | |
| DQ003642 | 22632 | 22790 | - | DQ003642_00028 | 52 | 6325.48 | 8.0 | 10.0477 | hypothetical protein | ||
| DQ003642 | 22780 | 23910 | - | DQ003642_00029 | 376 | 43607.97 | 22.5 | 9.8875 | integrase | PF00589.27 ;PF14657.11 | |
| DQ003642 | 23974 | 24483 | - | DQ003642_00030 | 169 | 19090.61 | -4.0 | 4.7634 | hypothetical protein | ||
| DQ003642 | 24510 | 25001 | - | DQ003642_00031 | 163 | 19313.85 | -3.5 | 5.2489 | metallo-protease | PF06114.18 ;PF06114.18 | |
| DQ003642 | 25033 | 25341 | - | DQ003642_00032 | 102 | 12055.50 | -7.0 | 4.5160 | transcriptional regulator | phrog_4583 ; phrog_8 ; phrog_34939 ; phrog_34341 ; phrog_2967 ; phrog_1373 | PF01381.27 ;PF12844.12 ;PF13560.11 ;PF13443.11 |
| DQ003642 | 25490 | 25741 | + | DQ003642_00033 | 83 | 9459.10 | 5.0 | 9.9068 | hypothetical protein | PF01381.27 ;PF12844.12 ;PF13560.11 | |
| DQ003642 | 25745 | 25981 | + | DQ003642_00034 | 78 | 8806.96 | -6.5 | 4.2932 | hypothetical protein | phrog_8019 | |
| DQ003642 | 25978 | 26331 | + | DQ003642_00035 | 117 | 13173.07 | -6.5 | 4.5028 | hypothetical protein | phrog_5996 | |
| DQ003642 | 26309 | 26851 | - | DQ003642_00036 | 180 | 21301.87 | -13.5 | 4.3140 | hypothetical protein | phrog_35898 |
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| MGYP001136272072.pdb | 3 | 158 | 2 | 157 | 0.9158 | 0.8837 |
| MGYP000857877464.pdb | 3 | 153 | 1 | 153 | 0.9213 | 0.88 |
| MGYP003297889933.pdb | 4 | 153 | 2 | 151 | 0.9271 | 0.8796 |
| MGYP000624096806.pdb | 2 | 153 | 1 | 152 | 0.9248 | 0.8788 |
| MGYP000140544837.pdb | 2 | 157 | 1 | 158 | 0.9094 | 0.8764 |
| MGYP000256199055.pdb | 4 | 153 | 2 | 150 | 0.9262 | 0.8755 |
| MGYP001078594949.pdb | 3 | 153 | 1 | 152 | 0.9198 | 0.8742 |
| MGYP003092880949.pdb | 3 | 156 | 2 | 158 | 0.9087 | 0.872 |
| MGYP000593100459.pdb | 2 | 153 | 1 | 154 | 0.9125 | 0.8717 |
| MGYP002510985417.pdb | 3 | 159 | 2 | 161 | 0.9002 | 0.8713 |
| Fam ID | Seed protein | Member count | Model | Alignment | APIS102 | DQ003642_00031 | 14 | HMM model | Member alignment |
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