APIS family ID | APIS104 | |||||||||||||
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Inhibited defense system | NAD+ reconstitution pathway (NARP) | |||||||||||||
CLAN ID | CLAN043 | |||||||||||||
Seed protein property |
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Phage property |
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PMID/References | Osterman et al., 2024 | |||||||||||||
PDB structures | ; | |||||||||||||
Pfam domains | PF04095.21,PF18127.6,PF04095.21,PF18127.6 | |||||||||||||
Phrog | ||||||||||||||
Host taxa | d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio; | |||||||||||||
Gene Location | Start: 138214; End: 139707; Strand: + | |||||||||||||
Description | Nicotinamide phosphoribosyltransferase activity (Nampt), capable of producing NMN from PRPP and nicotinamide. |
Genome accession | Start | End | Strand | Protein ID | Length | Molecular weight | Charge | Isoelectric point | Function | Phrog | PFAM |
---|---|---|---|---|---|---|---|---|---|---|---|
NC_005083.2 | 134159 | 135052 | + | NP_899505.1 | 297 | 33859.41 | -2.5 | 6.0402 | hypothetical protein | PF04095.21 | |
NC_005083.2 | 135055 | 136044 | + | NP_899506.1 | 329 | 37625.05 | -2.0 | 6.1731 | radical SAM domain-containing protein | phrog_14086 | PF04055.26 |
NC_005083.2 | 136037 | 137161 | - | NP_899507.1 | 374 | 42494.26 | -4.0 | 5.6792 | radical SAM domain-containing protein | phrog_14086 | PF04055.26 |
NC_005083.2 | 137172 | 137744 | - | NP_899508.1 | 190 | 22023.10 | -7.0 | 4.6580 | hypothetical protein | ||
NC_005083.2 | 137878 | 138114 | + | NP_899509.1 | 78 | 8113.51 | 2.5 | 8.5347 | hypothetical protein | phrog_35054 | |
NC_005083.2 | 138214 | 139707 | + | NP_899510.1 | 497 | 55551.39 | -2.0 | 6.1441 | nicotinamide phosphoribosyl transferase | PF04095.21 ;PF18127.6 ;PF04095.21 ;PF18127.6 | |
NC_005083.2 | 139815 | 140141 | + | NP_899511.1 | 108 | 12005.71 | 1.5 | 8.5283 | hypothetical protein | phrog_13928 | |
NC_005083.2 | 140183 | 140425 | + | NP_899512.1 | 80 | 9258.65 | 5.5 | 9.9732 | hypothetical protein | phrog_20714 | |
NC_005083.2 | 140432 | 140671 | + | NP_899513.1 | 79 | 9151.54 | -2.0 | 4.9187 | hypothetical protein | phrog_28417 | |
NC_005083.2 | 140671 | 141939 | + | NP_899514.1 | 422 | 48874.38 | -28.0 | 4.4392 | hypothetical protein | phrog_5960 | |
NC_005083.2 | 142000 | 142260 | + | NP_899515.1 | 86 | 10634.37 | 7.5 | 9.8519 | hypothetical protein | phrog_14560 |
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
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AF-G4VE80-F1-model_v4 | 3 | 483 | 8 | 472 | 0.9532 | 0.9254 |
AF-A0A0K0DSZ9-F1-model_v4 | 2 | 497 | 3 | 501 | 0.9308 | 0.9199 |
AF-A0A044T4A9-F1-model_v4 | 2 | 492 | 1 | 478 | 0.92 | 0.9146 |
AF-Q99KQ4-F1-model_v4 | 3 | 489 | 6 | 491 | 0.9239 | 0.9127 |
AF-Q80Z29-F1-model_v4 | 3 | 489 | 6 | 491 | 0.9238 | 0.9126 |
AF-E7F8T6-F1-model_v4 | 1 | 484 | 3 | 489 | 0.9171 | 0.9079 |
AF-P43490-F1-model_v4 | 1 | 484 | 1 | 488 | 0.9171 | 0.9067 |
AF-F1RDZ8-F1-model_v4 | 1 | 483 | 1 | 473 | 0.9199 | 0.9038 |
AF-A0A2R8S0I0-F1-model_v4 | 1 | 484 | 2 | 487 | 0.911 | 0.8829 |
AF-A0A2R8QPL7-F1-model_v4 | 1 | 484 | 5 | 490 | 0.9109 | 0.8805 |
Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
---|---|---|---|---|---|---|
MGYP003130852280.pdb | 1 | 484 | 3 | 478 | 0.9609 | 0.9399 |
MGYP000606618873.pdb | 1 | 482 | 1 | 465 | 0.9713 | 0.9369 |
MGYP001601770592.pdb | 3 | 481 | 1 | 464 | 0.9705 | 0.9349 |
MGYP001770783061.pdb | 3 | 484 | 3 | 469 | 0.9652 | 0.9347 |
MGYP001603787381.pdb | 3 | 482 | 1 | 457 | 0.9766 | 0.9344 |
MGYP001289397974.pdb | 1 | 483 | 3 | 474 | 0.9521 | 0.933 |
MGYP001611833638.pdb | 3 | 479 | 1 | 464 | 0.9675 | 0.9322 |
MGYP001330803909.pdb | 3 | 482 | 1 | 469 | 0.9625 | 0.9321 |
MGYP001569509104.pdb | 1 | 479 | 1 | 460 | 0.9714 | 0.932 |
MGYP001588446901.pdb | 2 | 481 | 1 | 474 | 0.9574 | 0.9317 |
Fam ID | Seed protein | Member count | Model | Alignment | APIS104 | NP_899510.1 | 240 | HMM model | Member alignment |
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