| APIS family ID | APIS109 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | ||||||||||||||
| CLAN ID | CLAN038 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | ||||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | PF09588.15 | |||||||||||||
| Phrog | ||||||||||||||
| Host taxa | ;;;;;; | |||||||||||||
| Gene Location | Start: ; End: ; Strand: | |||||||||||||
| Description | ||||||||||||||
| Note | This family does not have seed protein, but we infer its function is defending CRISPR-Cas evasion by DNA repair because it belongs to the same clan as family APIS185 which has seed protein. | |||||||||||||
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| AF-Q32GM8-F1-model_v4 | 1 | 283 | 1 | 220 | 0.7316 | 0.6329 |
| AF-Q8GW93-F1-model_v4 | 1 | 289 | 41 | 316 | 0.591 | 0.5353 |
| AF-A0A0N7KPH9-F1-model_v4 | 2 | 289 | 158 | 366 | 0.5877 | 0.5032 |
| AF-Q8SXR5-F1-model_v4 | 1 | 283 | 244 | 452 | 0.552 | 0.4513 |
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| MGYP001275816148.pdb | 1 | 203 | 2 | 194 | 0.9407 | 0.7755 |
| MGYP000122276344.pdb | 5 | 202 | 1 | 190 | 0.9443 | 0.7703 |
| MGYP003456770483.pdb | 1 | 192 | 1 | 181 | 0.9576 | 0.7671 |
| MGYP000308052368.pdb | 2 | 216 | 1 | 204 | 0.9128 | 0.7667 |
| MGYP003647753695.pdb | 1 | 283 | 1 | 192 | 0.9363 | 0.7664 |
| MGYP001582263125.pdb | 1 | 199 | 1 | 189 | 0.9417 | 0.7661 |
| MGYP000267747872.pdb | 1 | 195 | 1 | 183 | 0.951 | 0.7644 |
| MGYP000007684401.pdb | 5 | 292 | 1 | 199 | 0.9191 | 0.7642 |
| MGYP000205446686.pdb | 1 | 199 | 7 | 194 | 0.9279 | 0.7638 |
| MGYP001561254047.pdb | 1 | 191 | 1 | 181 | 0.9447 | 0.7558 |
| Fam ID | Seed protein | Member count | Model | Alignment | APIS109 | IMGVR_UViG_3300033148_004419|3300033148|Ga0366832_10019799 | 4 | HMM model | Member alignment |
|---|
| Member | pident | evalue | bitscore | qcovs | phage | host | SourceDB | Pfam | Phrog |
|---|---|---|---|---|---|---|---|---|---|
| IMGVR_UViG_3300033148_004419|3300033148|Ga0366832_10019799 | 100.000 | 1.692E-205 | 627 | 1.000% | IMGVR | PF09588 | phrog_ | ||
| IMGVR_UViG_3300035698_017249|3300035698|Ga0374944_613975_3753_4643 | 45.200 | 1.401E-70 | 238 | 0.980% | IMGVR | PF09588 | phrog_ | ||
| IMGVR_UViG_3300036985_007539|3300036985|Ga0393278_0000732_16737_17627 | 48.200 | 1.293E-78 | 261 | 0.990% | IMGVR | PF09588 | phrog_ | ||
| IMGVR_UViG_3300033148_006741|3300033148|Ga0366832_100247244 | 50.600 | 2.701E-85 | 280 | 0.986% | IMGVR | PF09588 | phrog_ |