| APIS family ID | APIS112 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | ||||||||||||||
| CLAN ID | CLAN038 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | ||||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | PF09588.15 | |||||||||||||
| Phrog | ||||||||||||||
| Host taxa | ;;;;;; | |||||||||||||
| Gene Location | Start: ; End: ; Strand: | |||||||||||||
| Description | ||||||||||||||
| Note | This family does not have seed protein, but we infer its function is defending CRISPR-Cas evasion by DNA repair because it belongs to the same clan as family APIS185 which has seed protein. | |||||||||||||
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| AF-A0A0H3GNV3-F1-model_v4 | 1 | 248 | 6 | 206 | 0.775 | 0.6822 |
| AF-Q32GM8-F1-model_v4 | 1 | 182 | 17 | 215 | 0.7781 | 0.6375 |
| AF-K7K9X8-F1-model_v4 | 1 | 246 | 20 | 227 | 0.6325 | 0.6191 |
| AF-I1KRY7-F1-model_v4 | 1 | 186 | 74 | 283 | 0.7938 | 0.5868 |
| AF-Q5XVK9-F1-model_v4 | 1 | 246 | 57 | 267 | 0.6288 | 0.5793 |
| AF-K7M7T4-F1-model_v4 | 1 | 246 | 76 | 283 | 0.6303 | 0.5666 |
| AF-Q8GW93-F1-model_v4 | 1 | 186 | 114 | 323 | 0.778 | 0.5524 |
| AF-Q552V3-F1-model_v4 | 12 | 153 | 47 | 213 | 0.7414 | 0.5336 |
| AF-C0HGN0-F1-model_v4 | 1 | 186 | 148 | 359 | 0.7796 | 0.5325 |
| AF-A0A1D6E7X0-F1-model_v4 | 1 | 186 | 150 | 361 | 0.7806 | 0.5322 |
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| MGYP000237959546.pdb | 1 | 263 | 7 | 266 | 0.9048 | 0.8849 |
| MGYP000007684401.pdb | 1 | 235 | 1 | 200 | 0.9315 | 0.8136 |
| MGYP001275816148.pdb | 1 | 186 | 7 | 192 | 0.9774 | 0.8095 |
| MGYP000122276344.pdb | 1 | 186 | 2 | 189 | 0.9537 | 0.8084 |
| MGYP001582263125.pdb | 1 | 184 | 7 | 189 | 0.9671 | 0.8057 |
| MGYP000308052368.pdb | 1 | 196 | 5 | 204 | 0.9213 | 0.7985 |
| MGYP001264630531.pdb | 1 | 177 | 1 | 178 | 0.9565 | 0.7979 |
| MGYP000267747872.pdb | 1 | 180 | 6 | 183 | 0.9606 | 0.7978 |
| MGYP001612759232.pdb | 1 | 187 | 1 | 187 | 0.9594 | 0.797 |
| MGYP001561254047.pdb | 1 | 177 | 6 | 181 | 0.9629 | 0.7912 |
| Fam ID | Seed protein | Member count | Model | Alignment | APIS112 | IMGVR_UViG_3300028901_000217|3300028901|Ga0310362_10263355 | 4 | HMM model | Member alignment |
|---|
| Member | pident | evalue | bitscore | qcovs | phage | host | SourceDB | Pfam | Phrog |
|---|---|---|---|---|---|---|---|---|---|
| IMGVR_UViG_3300028901_000217|3300028901|Ga0310362_10263355 | 100.000 | 9.709E-177 | 542 | 1.000% | IMGVR | PF09588 | phrog_ | ||
| IMGVR_UViG_3300037479_000410|3300037479|Ga0394879_0002615_41434_42294 | 38.700 | 2.769E-48 | 171 | 0.962% | IMGVR | PF09588 | phrog_8474 | ||
| IMGVR_UViG_3300014497_000005|3300014497|Ga0182008_1000026661 | 47.800 | 7.788E-63 | 214 | 0.913% | IMGVR | PF09588 | phrog_ | ||
| IMGVR_UViG_3300027781_000032|3300027781|Ga0209175_100004391 | 38.200 | 1.428E-45 | 164 | 0.920% | IMGVR | PF09588 | phrog_ |