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Seed proteins  | Seed protein 3D structures  |  Structural homologs  |  Family infomation  | Homology to other families  | Family members, sources, and their hosts  

Seed protein information help

APIS family ID APIS118
Inhibited defense system
CLAN ID CLAN044
Seed protein property
Accession ID Gene name Protein length Molecular weight Isoelectric point Charge
IMGVR_UViG_3300046616_000314|3300046616|Ga0495668_0000005_189584_190411
gene_page: 275 31207.27 6.1492 -3.5
Phage property
Phage Assembly id
IMGVR_UViG_3300046616_000314
PMID/References
PDB structures ;
Pfam domains
Phrog phrog_6408
Host taxa ;;;;;;
Gene Location Start: ;  End: ;  Strand: 
Description
Note This family does not have seed protein, but we infer its function is defending TIR-STING because it belongs to the same clan as family APIS150 which has seed protein.

Predicted 3D structure by alphafold2 with pTM = 0.68 Download help

pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;      Download help

Structural homologs

Structure homologs against by afdb (html) ; download full result table

Hit Query start Query end Hit start Hit end TMscore(ali) TMscore(avg)
AF-K0F285-F1-model_v4 1 244 2 226 0.7627 0.6803
AF-A0A175VXB9-F1-model_v4 1 272 70 521 0.7346 0.4758
AF-U7PK60-F1-model_v4 1 271 83 581 0.7301 0.4631

Structure homologs against by esmdb (html) ; download full result table

Hit Query start Query end Hit start Hit end TMscore(ali) TMscore(avg)
MGYP000356684797.pdb 5 202 1 190 0.9116 0.7635
MGYP003528444135.pdb 6 189 1 176 0.9376 0.7625
MGYP003545336784.pdb 2 187 2 182 0.9208 0.7591
MGYP003126718492.pdb 10 187 1 177 0.928 0.7577
MGYP003394754069.pdb 2 198 2 193 0.8965 0.7551
MGYP001599744819.pdb 10 187 1 176 0.925 0.7527
MGYP001440284733.pdb 3 187 2 178 0.9211 0.7521
MGYP003649494258.pdb 7 192 1 183 0.906 0.7469
MGYP001006496577.pdb 4 190 1 184 0.9025 0.7458
MGYP000217366546.pdb 2 189 1 185 0.9003 0.7456

Family information      Download help

Fam ID Seed protein Member count Model Alignment
APIS118 IMGVR_UViG_3300046616_000314|3300046616|Ga0495668_0000005_189584_190411 5 HMM model Member alignment

Host Taxa distribution

Length distribution

Homology to other families       help

Clan ID: CLAN044

APIS118 has no similar APIS family.

Family members, sources, and their hosts        help

Results of representative protein blast against members.
Member pident evalue bitscore qcovs phage host SourceDB Pfam Phrog
IMGVR_UViG_3300046616_000314|3300046616|Ga0495668_0000005_189584_190411 100.000 6.538E-190 581 1.000% IMGVR phrog_6408
IMGVR_UViG_3300050120_000230|3300050120|Ga0500009_000031_363809_364756 46.800 5.487E-82 270 1.000% IMGVR phrog_6408
IMGVR_UViG_3300046660_000488|3300046660|Ga0495625_0000006_115985_116890 47.200 1.931E-69 233 0.978% IMGVR phrog_6408
IMGVR_UViG_3300028423_000861|3300028423|Ga0307028_1000008120 42.800 1.366E-60 208 0.989% IMGVR phrog_4784 phrog_6408
IMGVR_UViG_3300049988_000286|3300049988|Ga0496889_0000001_474118_474927 40.400 4.568E-54 189 0.967% IMGVR phrog_6408