| APIS family ID | APIS120 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | ||||||||||||||
| CLAN ID | CLAN038 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | ||||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | PF09588.15 | |||||||||||||
| Phrog | phrog_434,phrog_8474,phrog_1956 | |||||||||||||
| Host taxa | d__Bacteria;p__Firmicutes;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Mitsuokella; | |||||||||||||
| Gene Location | Start: ; End: ; Strand: | |||||||||||||
| Description | ||||||||||||||
| Note | This family does not have seed protein, but we infer its function is defending CRISPR-Cas evasion by DNA repair because it belongs to the same clan as family APIS185 which has seed protein. | |||||||||||||
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| AF-Q32GM8-F1-model_v4 | 2 | 194 | 1 | 214 | 0.7655 | 0.6304 |
| AF-I1KRY7-F1-model_v4 | 1 | 199 | 64 | 283 | 0.7787 | 0.557 |
| AF-C0HGN0-F1-model_v4 | 3 | 199 | 143 | 359 | 0.7761 | 0.498 |
| AF-Q4DEY6-F1-model_v4 | 8 | 280 | 1 | 445 | 0.5427 | 0.4554 |
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| MGYP001240244318.pdb | 1 | 315 | 7 | 314 | 0.8979 | 0.8827 |
| MGYP003315020170.pdb | 1 | 280 | 2 | 279 | 0.9417 | 0.88 |
| MGYP000789680257.pdb | 1 | 315 | 5 | 316 | 0.8942 | 0.8775 |
| MGYP000462031225.pdb | 1 | 315 | 2 | 305 | 0.8952 | 0.8719 |
| MGYP002794716668.pdb | 1 | 315 | 1 | 309 | 0.8914 | 0.8644 |
| MGYP000253875159.pdb | 1 | 315 | 1 | 309 | 0.886 | 0.8605 |
| MGYP000483787253.pdb | 1 | 315 | 2 | 316 | 0.8826 | 0.86 |
| MGYP002543796193.pdb | 1 | 314 | 4 | 315 | 0.8739 | 0.857 |
| MGYP000866105608.pdb | 1 | 314 | 6 | 327 | 0.8839 | 0.853 |
| MGYP003143998244.pdb | 1 | 315 | 2 | 297 | 0.8823 | 0.8497 |
| Fam ID | Seed protein | Member count | Model | Alignment | APIS120 | MGV-GENOME-0252771_51 | 12 | HMM model | Member alignment |
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