| APIS family ID | APIS126 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | ||||||||||||||
| CLAN ID | CLAN044 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | ||||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | ||||||||||||||
| Phrog | phrog_6408 | |||||||||||||
| Host taxa | ;;;;;; | |||||||||||||
| Gene Location | Start: ; End: ; Strand: | |||||||||||||
| Description | ||||||||||||||
| Note | This family does not have seed protein, but we infer its function is defending TIR-STING because it belongs to the same clan as family APIS150 which has seed protein. | |||||||||||||
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| AF-A0A044REC5-F1-model_v4 | 1 | 269 | 34 | 418 | 0.6544 | 0.5539 |
| AF-O74765-F1-model_v4 | 1 | 269 | 37 | 423 | 0.6569 | 0.5525 |
| AF-A0A077ZD58-F1-model_v4 | 1 | 269 | 43 | 424 | 0.6533 | 0.5495 |
| AF-Q9VF85-F1-model_v4 | 1 | 253 | 146 | 401 | 0.6619 | 0.5494 |
| AF-Q9VZY9-F1-model_v4 | 1 | 276 | 39 | 441 | 0.6692 | 0.5471 |
| AF-O45869-F1-model_v4 | 1 | 272 | 32 | 431 | 0.6666 | 0.5466 |
| AF-A0A0K0EE19-F1-model_v4 | 1 | 269 | 34 | 437 | 0.6561 | 0.5457 |
| AF-X8FDG5-F1-model_v4 | 1 | 245 | 63 | 294 | 0.594 | 0.5441 |
| AF-Q5JKQ3-F1-model_v4 | 1 | 253 | 149 | 411 | 0.659 | 0.544 |
| AF-A0A133CKV6-F1-model_v4 | 1 | 253 | 166 | 423 | 0.6532 | 0.5403 |
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| MGYP001180969412.pdb | 1 | 218 | 1 | 179 | 0.9467 | 0.7521 |
| MGYP001769288384.pdb | 1 | 220 | 6 | 184 | 0.9329 | 0.7486 |
| MGYP001445006980.pdb | 1 | 222 | 1 | 181 | 0.9297 | 0.7447 |
| MGYP000205058133.pdb | 1 | 222 | 1 | 181 | 0.9251 | 0.7407 |
| MGYP000095920965.pdb | 1 | 223 | 1 | 189 | 0.9071 | 0.7377 |
| MGYP003419707300.pdb | 1 | 223 | 1 | 184 | 0.9191 | 0.7371 |
| MGYP001563721805.pdb | 1 | 228 | 1 | 187 | 0.9133 | 0.7371 |
| MGYP001564868387.pdb | 1 | 223 | 8 | 200 | 0.8831 | 0.7353 |
| MGYP000968941276.pdb | 1 | 222 | 6 | 187 | 0.9105 | 0.7346 |
| MGYP003589866409.pdb | 1 | 218 | 4 | 176 | 0.9295 | 0.7335 |
| Fam ID | Seed protein | Member count | Model | Alignment | APIS126 | IMGVR_UViG_GVMAG-S-3300006056-154_000001|3300006056|Ga0075163_1001601612 | 5 | HMM model | Member alignment |
|---|
| Member | pident | evalue | bitscore | qcovs | phage | host | SourceDB | Pfam | Phrog |
|---|---|---|---|---|---|---|---|---|---|
| IMGVR_UViG_GVMAG-S-3300006056-154_000001|3300006056|Ga0075163_1001601612 | 100.000 | 9.012E-197 | 602 | 1.000% | IMGVR | phrog_6408 | |||
| IMGVR_UViG_GVMAG-S-1004661-13_000001|3300025215|Ga0207920_100000515 | 41.000 | 4.550E-62 | 213 | 0.987% | IMGVR | PF00152 | phrog_6408 phrog_4806 | ||
| IMGVR_UViG_GVMAG-S-3300009702-144_000001|3300009702|Ga0114931_100042831 | 42.100 | 2.499E-65 | 223 | 0.993% | IMGVR | PF01409 | phrog_6408 | ||
| IMGVR_UViG_3300042258_000235|3300042258|Ga0451648_000152_95096_95884 | 35.900 | 2.812E-50 | 179 | 0.993% | IMGVR | phrog_6408 phrog_4806 | |||
| IMGVR_UViG_3300042922_001492|3300042922|Ga0456363_0000096_72934_73776 | 37.500 | 8.523E-54 | 189 | 0.987% | IMGVR | phrog_6408 |