| APIS family ID | APIS128 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | ||||||||||||||
| CLAN ID | CLAN003 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | ||||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | PF07275.16,PF07275.16 | |||||||||||||
| Phrog | ||||||||||||||
| Host taxa | d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;s__unclassified Candidatus Pelagibacter species | |||||||||||||
| Gene Location | Start: 34672; End: 35202; Strand: - | |||||||||||||
| Description | ||||||||||||||
| Note | This family does not have seed protein, but we infer its function is defending restriction-modification (RM) because it belongs to the same clan as family APIS003,ardu which has seed protein. | |||||||||||||
| Genome accession | Start | End | Strand | Protein ID | Length | Molecular weight | Charge | Isoelectric point | Function | Phrog | PFAM |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MT375530 | 33494 | 33793 | - | MT375530_00037 | 99 | 11699.90 | 6.5 | 9.2109 | hypothetical protein | ||
| MT375530 | 33820 | 33969 | - | MT375530_00038 | 49 | 5707.23 | -6.0 | 4.2397 | hypothetical protein | ||
| MT375530 | 34040 | 34237 | - | MT375530_00039 | 65 | 7452.62 | -1.5 | 5.0364 | hypothetical protein | ||
| MT375530 | 34237 | 34401 | - | MT375530_00040 | 54 | 6167.43 | 8.0 | 11.7507 | hypothetical protein | ||
| MT375530 | 34401 | 34571 | - | MT375530_00041 | 56 | 6548.72 | 8.0 | 10.5952 | hypothetical protein | ||
| MT375530 | 34672 | 35202 | - | MT375530_00042 | 176 | 20108.83 | -22.5 | 3.9308 | anti-restriction protein | PF07275.16 ;PF07275.16 | |
| MT375530 | 35312 | 35539 | - | MT375530_00043 | 75 | 8724.00 | 0.5 | 6.6253 | hypothetical protein | ||
| MT375530 | 35690 | 35986 | - | MT375530_00044 | 98 | 11849.96 | 16.5 | 10.7547 | hypothetical protein | ||
| MT375530 | 36322 | 36744 | - | MT375530_00045 | 140 | 15708.91 | -0.5 | 6.2394 | baseplate hub subunit and tail lysozyme | phrog_33534 | PF00959.24 |
| MT375530 | 36735 | 38369 | - | MT375530_00046 | 544 | 61624.29 | -0.5 | 6.4570 | terminase large subunit | phrog_15524 | PF22530.1 ;PF03237.20 ;PF05876.17 |
| MT375530 | 38359 | 38598 | - | MT375530_00047 | 79 | 8998.21 | -4.5 | 4.5482 | hypothetical protein |
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| AF-A0A0H3GZQ3-F1-model_v4 | 4 | 174 | 1 | 168 | 0.807 | 0.7599 |
| AF-A0A132P918-F1-model_v4 | 8 | 175 | 1 | 166 | 0.7784 | 0.7237 |
| AF-A0A132ZEK5-F1-model_v4 | 8 | 175 | 1 | 167 | 0.7757 | 0.7224 |
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| MGYP003118095974.pdb | 8 | 176 | 1 | 167 | 0.97 | 0.9392 |
| MGYP000976174847.pdb | 9 | 176 | 1 | 171 | 0.9235 | 0.9012 |
| MGYP001158282924.pdb | 1 | 175 | 3 | 178 | 0.8938 | 0.8672 |
| MGYP003145215081.pdb | 5 | 175 | 1 | 174 | 0.8781 | 0.8532 |
| MGYP003150820949.pdb | 2 | 175 | 1 | 178 | 0.8785 | 0.8526 |
| MGYP003656451946.pdb | 1 | 176 | 13 | 196 | 0.9051 | 0.8427 |
| MGYP003149202041.pdb | 8 | 176 | 7 | 173 | 0.8764 | 0.8389 |
| MGYP000722138176.pdb | 4 | 175 | 1 | 178 | 0.8568 | 0.8261 |
| MGYP000365514984.pdb | 1 | 175 | 1 | 178 | 0.8542 | 0.8252 |
| MGYP000918170002.pdb | 7 | 175 | 1 | 177 | 0.8497 | 0.825 |
| Fam ID | Seed protein | Member count | Model | Alignment | APIS128 | MT375530_00042 | 30 | HMM model | Member alignment |
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